Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03371 ATGGCAAAACTATCAAAACAACAAACTCAGAAAAACAATAATAATGCAAATAGCACTGTCAATAATACCAAAGTGAGAAGAACAAGAAGAAGTGTCCCAAGAGATTCCCCAATTCAACGCAGCTCAATATACAGAGGAGTCACTAGGCACAGATGGACAGGTCGATATGAAGCTCATTTGTGGGACAAGAATTGTTGGAACGAATCACAAAACAAGAAAGGACGACAAGGGGCTTATGATGATGAAGAGGCGGCAGCACACGCTTATGATCTAGCTGCATTGAAATATTGGGGTCCAGATACCATTCTTAACTTTCCGTTATGTACCTACCAGAATCAATTGAGAGAAATGGAGGATCAGTCAAGGGAGGAGTATATTGGATCGTTAAGGAGAAAAAGCAGCGGTTTTTCTCGCGGAGTTTCTAAATACCGGGGTGTAGCGAGACACCATCATAATGGAAGGTGGGAGGCTCGTATTGGCAGGGTATTTGGCAACAAATATCTTTATCTTGGAACATATGCTACACAAGAAGAAGCTGCTACGGCATATGATATGGCAGCTATTGAATATCGTGGACTCAATGCTGTTACAAATTTTGACCTTAGCCGTTATATTAAGTGGCTTAAACCTAATCATCATAACAATAACAACGAAAATAACACCAAACTTATTCATAATTCTAACCCAACAATTTGTGACACTAATGAAGAAGAACAAGGACTTAGCTTGTTTCACACTCAAAATGAGTCATTTGGAAGAGAAGAAAAAGAAGCCATAACAACAATAACACAACCTCGCCCGGGTGGCGGCGCCACGTCAGCATTAGGTCTTTTGCTTCAATCATCAAAGTTTAAAGAGATGTTGGAAATGACAAATAGTATTGGTGATGATGATTTGTCCACAACGCCACAAAAGTCATACACATTTCCTGATGACATTCAGACATACTTTGAATGTAGTGATGATCATAATTCTTCTTCCGGTAAATATGGGGAAGGGGATATTGATTTCTTCAATGGCTTCAACTTCAATGGCTTCCACTTTGCTTGA 1050 0.3962 MAKLSKQQTQKNNNNANSTVNNTKVRRTRRSVPRDSPIQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDDEEAAAHAYDLAALKYWGPDTILNFPLCTYQNQLREMEDQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNHHNNNNENNTKLIHNSNPTICDTNEEEQGLSLFHTQNESFGREEKEAITTITQPRPGGGATSALGLLLQSSKFKEMLEMTNSIGDDDLSTTPQKSYTFPDDIQTYFECSDDHNSSSGKYGEGDIDFFNGFNFNGFHFA 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03371 349 Gene3D AP2/ERF domain 43 108 IPR036955 GO:0003700|GO:0006355
Trre4g03371 349 Gene3D AP2/ERF domain 141 202 IPR036955 GO:0003700|GO:0006355
Trre4g03371 349 Pfam AP2 domain 141 192 IPR001471 GO:0003700|GO:0006355
Trre4g03371 349 Pfam AP2 domain 43 98 IPR001471 GO:0003700|GO:0006355
Trre4g03371 349 ProSiteProfiles AP2/ERF domain profile. 43 106 IPR001471 GO:0003700|GO:0006355
Trre4g03371 349 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 11 253 - -
Trre4g03371 349 FunFam AP2-like ethylene-responsive transcription factor 141 202 - -
Trre4g03371 349 SUPERFAMILY DNA-binding domain 141 202 IPR016177 GO:0003677
Trre4g03371 349 ProSiteProfiles AP2/ERF domain profile. 142 200 IPR001471 GO:0003700|GO:0006355
Trre4g03371 349 SUPERFAMILY DNA-binding domain 42 107 IPR016177 GO:0003677
Trre4g03371 349 MobiDBLite consensus disorder prediction 1 26 - -
Trre4g03371 349 PRINTS Ethylene responsive element binding protein signature 182 202 IPR001471 GO:0003700|GO:0006355
Trre4g03371 349 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Trre4g03371 349 MobiDBLite consensus disorder prediction 1 36 - -
Trre4g03371 349 CDD AP2 141 202 IPR001471 GO:0003700|GO:0006355
Trre4g03371 349 SMART rav1_2 43 112 IPR001471 GO:0003700|GO:0006355
Trre4g03371 349 SMART rav1_2 142 206 IPR001471 GO:0003700|GO:0006355
Trre4g03371 349 FunFam AP2-like ethylene-responsive transcription factor 42 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03371 Trre-Chr4 40268865 40273235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03371 136 218 AP2-EREBP Transcription Factor Family AT5G57390 38.462 8.49e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre4g03371 AP2 1.4e-09 CL0081