Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03367 ATGCCTGATATGGCTAATCTTTCTATCTCCACCGTACTCAGTTCCACCGTCAAACCCAATCCAACTGATGATGCCAATGTCCTCGATTTAGCTGCTGCTGCTGCTGTTGTTGAAGAACCACTACCTGATGCTGAATTTGGTTCTGATAATGGCGCCGATAATGGCTCCCATGCTCGGATTTTGAAGAGGAGTCGTAGTTCTCTTAGGAAGACAGGCAATGCTAAGAGTTTGTGGGATCGTCTTACAGATCCTAATTCTCTTCCATTTCTCGTTGGTGCCCCCAAGATGGTTGAATGCTTATTGTGCCACCATTCTGTGTCTCCTGAGGAGGACCTGCTATGTTCTGTTCATGGGTGTGGCTCACGCTATCATAAGGAATGTGCAAAAGAAGCCGGCGGGAAGAAGTTCAAGTGTCCACAACATGCGTGCTTCATTTGCAAGCAAAAGCTGCATTTGCGGTGTGTGCGTTGTCCGGCGGCTTTCCATATTAAATGTGCACCATGGCCAGAAGCAGTGGTCCTTCTGAAAGATCATCCGGGAAAAGCTATTTGTTGGAGACATCCTTCTGATTGGCGCCTGGATAAAAAGGAGCAACCTGATATTCCAAAGCAACCTGATACTCCAATTACTGACATTTCGGAAATATTTTGTCGTTTGCCTCTTCCTTATATTGACGAGGAATTCAAAATCGACTTCACTTGGAAAGACATGGACAACAAGATAGAGCCACCACCATACACACACATAAGGCGCAATATATACCTAGTAAAGAAAAAGCGTAGTGATGTAGATGAAGATGCTGGGTGCACAAACTGCAGTTCTGGATGCTCTGATGATTGTGTATGCAGGGTTCAATGCATAAGCTGCTCAAAGGCCTGTCGGTGCTCTGAAAATTGTAAAAATCGGCCATTTCGCAAGGAGAAAAAGATCAGGGTTGTCAAGACTGAGTTTTGTGGATGGGGAGTTGAGGCTGCTGAAACAATTGAGAAAGGAGAGTTCATAATTGAGTATGTTGGAGAAGTCATTGACGATGCTGCATGTGAACAAAGGCTTTGGGACATGAAATATAAGGGTGTAGAGAATTTTTACATGTGTGAGATTCGTAAAGACTTCACAATAGATGCAACTTTCAAAGGAAATTCTTCACGCTTTTTAAACCATAGCTGTGATCCCAATTGTGTTTTGGAGAAGTGGCAAGTAGATGGTGAAACCCGTGTTGGTGTATTTGCTGCTTGTTCAATAGAAGTTGGAGAGCCATTAACATATGATTATAGGTAA 1278 0.4358 MPDMANLSISTVLSSTVKPNPTDDANVLDLAAAAAVVEEPLPDAEFGSDNGADNGSHARILKRSRSSLRKTGNAKSLWDRLTDPNSLPFLVGAPKMVECLLCHHSVSPEEDLLCSVHGCGSRYHKECAKEAGGKKFKCPQHACFICKQKLHLRCVRCPAAFHIKCAPWPEAVVLLKDHPGKAICWRHPSDWRLDKKEQPDIPKQPDTPITDISEIFCRLPLPYIDEEFKIDFTWKDMDNKIEPPPYTHIRRNIYLVKKKRSDVDEDAGCTNCSSGCSDDCVCRVQCISCSKACRCSENCKNRPFRKEKKIRVVKTEFCGWGVEAAETIEKGEFIIEYVGEVIDDAACEQRLWDMKYKGVENFYMCEIRKDFTIDATFKGNSSRFLNHSCDPNCVLEKWQVDGETRVGVFAACSIEVGEPLTYDYR 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03367 425 SMART set_7 308 425 IPR001214 GO:0005515
Trre4g03367 425 FunFam Histone-lysine N-methyltransferase 223 425 - -
Trre4g03367 425 MobiDBLite consensus disorder prediction 44 67 - -
Trre4g03367 425 PANTHER SET DOMAIN PROTEINS 59 425 - -
Trre4g03367 425 Gene3D SET domain 224 425 IPR046341 -
Trre4g03367 425 ProSiteProfiles AWS domain profile. 265 308 IPR006560 GO:0005634|GO:0042054
Trre4g03367 425 ProSiteProfiles SET domain profile. 308 425 IPR001214 GO:0005515
Trre4g03367 425 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 259 292 IPR017896 -
Trre4g03367 425 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 425 IPR025787 -
Trre4g03367 425 Pfam SET domain 319 424 IPR001214 GO:0005515
Trre4g03367 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 191 IPR013083 -
Trre4g03367 425 SUPERFAMILY SET domain 228 424 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03367 Trre-Chr4 40231288 40236173 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03367 289 424 C2H2 Transcription Factor Family AT2G23740 35.948 2.26e-21 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre4g03367 SET 5.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03367 - - tpra:123884811 805.823