Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03366 ATGCCTGATATGGCTAATCTTTCTATCTCCACCGTACTCAGTTCCACCGTCAAACCCAATCCAACTGATGATGCCAATGTCCTCGATTTAGCTGCTGCTGCTGCTGTTGTTGAAGAACCACTACCTGATGCTGAATTTGGTTCTGATAATGGCGCCGATAATGGCTCCCATGCTCGGATTTTGAAGAGGAGTCGTAGTTCTCTTAGGAAGACAGGCAATGCTAAGAGTTTGTGGGATCGTCTTACAGATCCTAATTCTCTTCCATTTCTCGTTGGTGCCCCCAAGATGGTTGAATGCTTATTGTGCCACCATTCTGTGTCTCCTGAGGAGGACCTGCTATGTTCTGTTCATGGGTGTGGCTCACGCTATCATAAGGAATGTGCAAAAGAAGCCGGCGGGAAGAAGTTCAAGTGTCCACAACATGCGTGCTTCATTTGCAAGCAAAAGCTGCATTTGCGGTGTGTGCGTTGTCCGGCGGCTTTCCATATTAAATGTGCACCATGGCCAGAAGCAGTGGTCCTTCTGAAAGATCATCCGGGAAAAGCTATTTGTTGGAGACATCCTTCTGATTGGCGCCTGGATAAAAAGCAACCTGATACTCCAATTACTGACATTTCGGAAATATTTTGTCGTTTGCCTCTTCCTTATATTGACGAGGAATTCAAAATCGACTTCACTTGGAAAGACATGGACAACAAGATAGAGCCACCACCATACACACACATAAGGCGCAATATATACCTAGTAAAGAAAAAGCGTAGTGATGTAGATGAAGATGCTGGGTGCACAAACTGCAGTTCTGGATGCTCTGATGATTGTGTATGCAGGGTTCAATGCATAAGCTGCTCAAAGGCCTGTCGGTGCTCTGAAAATTGTAAAAATCGGCCATTTCGCAAGGAGAAAAAGATCAGGGTTGTCAAGACTGAGTTTTGTGGATGGGGAGTTGAGGCTGCTGAAACAATTGAGAAAGGAGAGTTCATAATTGAGTATGTTGGAGAAGTCATTGACGATGCTGCATGTGAACAAAGGCTTTGGGACATGAAATATAAGGGTGTAGAGAATTTTTACATGTGTGAGATTCGTAAAGACTTCACAATAGATGCAACTTTCAAAGGAAATTCTTCACGCTTTTTAAACCATAGCTGTGATCCCAATTGTGTTTTGGAGAAGTGGCAAGTAGATGGTGAAACCCGTGTTGGTGTATTTGCTGCTTGTTCAATAGAAGTTGGAGAGCCATTAACATATGATTATAGGTAA 1257 0.436 MPDMANLSISTVLSSTVKPNPTDDANVLDLAAAAAVVEEPLPDAEFGSDNGADNGSHARILKRSRSSLRKTGNAKSLWDRLTDPNSLPFLVGAPKMVECLLCHHSVSPEEDLLCSVHGCGSRYHKECAKEAGGKKFKCPQHACFICKQKLHLRCVRCPAAFHIKCAPWPEAVVLLKDHPGKAICWRHPSDWRLDKKQPDTPITDISEIFCRLPLPYIDEEFKIDFTWKDMDNKIEPPPYTHIRRNIYLVKKKRSDVDEDAGCTNCSSGCSDDCVCRVQCISCSKACRCSENCKNRPFRKEKKIRVVKTEFCGWGVEAAETIEKGEFIIEYVGEVIDDAACEQRLWDMKYKGVENFYMCEIRKDFTIDATFKGNSSRFLNHSCDPNCVLEKWQVDGETRVGVFAACSIEVGEPLTYDYR 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03366 418 Gene3D SET domain 217 418 IPR046341 -
Trre4g03366 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 191 IPR013083 -
Trre4g03366 418 MobiDBLite consensus disorder prediction 44 67 - -
Trre4g03366 418 FunFam Histone-lysine N-methyltransferase 216 418 - -
Trre4g03366 418 SUPERFAMILY SET domain 221 417 IPR046341 -
Trre4g03366 418 ProSiteProfiles SET domain profile. 301 418 IPR001214 GO:0005515
Trre4g03366 418 ProSiteProfiles AWS domain profile. 258 301 IPR006560 GO:0005634|GO:0042054
Trre4g03366 418 PANTHER SET DOMAIN PROTEINS 59 418 - -
Trre4g03366 418 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 418 IPR025787 -
Trre4g03366 418 Pfam SET domain 312 417 IPR001214 GO:0005515
Trre4g03366 418 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 252 285 IPR017896 -
Trre4g03366 418 SMART set_7 301 418 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03366 Trre-Chr4 40231288 40236173 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03366 282 417 C2H2 Transcription Factor Family AT2G23740 35.948 2.21e-21 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre4g03366 SET 5.3e-18 No_clan