Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03353 ATGTCAACCACCGTAGTTGTTCTCGACAACGGCGGAGGTCTAATCAAAGCAGGTTTCGGCGGCGAACGTGACCCATCCGTCATTCTCCCTAACTGTCTCTACAAACCTCTCACCTCCAAAAAATGGCTCCATCCAAATCCCCTAAACACCACCACCACCGCCGAACAAGACCTCACCTCCGCCTCCGTCCGCCGTCCAATCGATCGCGGCTACCTAATCAACCCCGACCTCCAACGTGATATCTGGTCTCATCTCTTCACCTCAATCCTTCACATAAACCCTTCCCAATCCTCTCTTCTTCTCACTGAACCTCTCTTCACTCTACCTTCAATTCAACACTCCATTGACGAACTCGTTTTCGAAGATTTCAATTTCACTTCTCTCTACATCGCTGATTCTCCTTCCCTTGTTCATCTCTACGAAACTAGCCGTAGGCCCGATGGGCTTCTCTCTAAAGCCCAATGTAGTCTCGTTGTTGATTCTGGTTTCTCTTTCACACACGCTTCACCCGTTTTTCAAAATTTTACTCTTAATTACGCTGTTAAACGAATCGATTTAGGTGGTAAAGCATTAACTAATTACCTTAAAGAACTTATTTCTTTTCGTTCTGTTAATGTTATGGATGAAACTTTCATTATTGATGATGTTAAGGAAAATTTATGCTTCGTATCGGTCGATGTCGCTCGGCATCTTAATATTGCTAGAAAGACTGGAAATGAGAATGTTTTGAAATGTACATATGTGCTTCCTGATGGTGTTAATTATACAAAGGGTTTTGTTAAATATCCAGAACAAGCAACTAGGTATCTTGTTGATGGTAATGGTAAAGAGAATCTCGTTGGTGGTGGCGGTGCTGGTGCTGGTGATCGTGAAATTATTGCTCAACAACAACCTCAGAAACTAGTTGATTTGACGAAAAATGAATTTGACTTGACGAATGAACGGTTTCTTGTACCCGAGATGATCTTCCGTCCAGCTGATTTGGGAATGAACCAGGCTGGGTTACCAGAATGTATAATACGAGCTGTTAATGCCTGCCATCCACATCTTCACCCCGTACTCTATGAAAGCATCATTTTGACTGGTGGAAGCACCTTGTTTCCTAACTTCGCCGAACGACTAGAGAAGGAGCTTCGGCCTCTAGTTCCTGATGACTATCGTGTGAAGATAACTACACAAGAAGATCCCCTACTAGGTGTTTGGCGTGGAGGTTCACTCCTGGCATCGAGTCCAGATTTTGATGCAATGTGTGTAACCAAAGCTGAGTATGAGGAGCTGGGTTCTGCTAGATGTCGCAAGAGATTTTTTCATTAA 1314 0.4368 MSTTVVVLDNGGGLIKAGFGGERDPSVILPNCLYKPLTSKKWLHPNPLNTTTTAEQDLTSASVRRPIDRGYLINPDLQRDIWSHLFTSILHINPSQSSLLLTEPLFTLPSIQHSIDELVFEDFNFTSLYIADSPSLVHLYETSRRPDGLLSKAQCSLVVDSGFSFTHASPVFQNFTLNYAVKRIDLGGKALTNYLKELISFRSVNVMDETFIIDDVKENLCFVSVDVARHLNIARKTGNENVLKCTYVLPDGVNYTKGFVKYPEQATRYLVDGNGKENLVGGGGAGAGDREIIAQQQPQKLVDLTKNEFDLTNERFLVPEMIFRPADLGMNQAGLPECIIRAVNACHPHLHPVLYESIILTGGSTLFPNFAERLEKELRPLVPDDYRVKITTQEDPLLGVWRGGSLLASSPDFDAMCVTKAEYEELGSARCRKRFFH 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03353 437 SUPERFAMILY Actin-like ATPase domain 154 436 IPR043129 -
Trre4g03353 437 Gene3D Actin; Chain A, domain 4 192 264 - -
Trre4g03353 437 SMART actin_3 3 436 IPR004000 -
Trre4g03353 437 CDD NBD_sugar-kinase_HSP70_actin 6 198 - -
Trre4g03353 437 Gene3D - 302 407 - -
Trre4g03353 437 FunFam Actin-related protein 6 131 191 - -
Trre4g03353 437 Pfam Actin 3 436 IPR004000 -
Trre4g03353 437 FunFam Putative actin-related protein 5 400 428 - -
Trre4g03353 437 FunFam Putative actin-related protein 6 192 279 - -
Trre4g03353 437 FunFam ARP5 actin-related protein 5 homolog 333 399 - -
Trre4g03353 437 SUPERFAMILY Actin-like ATPase domain 2 137 IPR043129 -
Trre4g03353 437 PANTHER ACTIN 6 428 IPR004000 -
Trre4g03353 437 Gene3D - 2 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03353 Trre-Chr4 39979929 39982759 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03353 6 436 Cytoskeleton Gene Families AT3G12110 27.356 4.47e-58 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03353 K11662 - gmx:100819827 694.115