Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03339 ATGAGTAGGTCGCCATCATTTCGAGTAAAAACGGAAGTGAATCCGAATGTTGATTCAGAATCACTTAAACAATGGGTTGTTGCATTTTGTGCTATTAGATTCGATCTTGAACAAGGTCAACTTGTTGAAGAATGTTATCCACAAGGTGTTCTTTCTAATGATCAGGAGCTTGAAATTGCTTATAGTTCCTTCCCCGATTCCGTTTCTCAGCATCAAAATCGCTCCAGCATTCATGATTGTATTTTCTTTTTCCGAATTTGCAGGCAACATTTTAAATCTCGATTCGCCAATGCCAATGCCACGAGTTCGCACAAGGATGATTCTTGTGAGTATTTGTATGGTTATGTGTTTAATAGACAGAGACACGATGAGAGACTTAAACGCGGTGGCGAACAGAAATCCGTTGTGATTTTATCTCATTGTCCTTATTCTAGTGTTTTTAGACCTTTGTTACAAATTGTAGGTCCTTTGTTTTTCGATATTGGTAAGAAAGCGCTCGAGCATATTGCGGCTTATGTTTCGAAATGGCCACCTCCTGTTCCTGGTCAGGTAATGGATCTACCGATCGGAAATGCCACGCTTAAAGTCAGCTTACCACCGGCGCTTAGTTTGCCTTTTGAAAATGGATTGTCTTTTGAGGAGTCGGTTGTGCCTTTACTTGCAAACAATAATCAGTCTGTCGTCCAGGGTCTTTTCCACGATTCGGATCTTTTTGGGTCTTTTCGTGGACTTTTATTGCAGCTTTGGTTGTTATGGGAGTTGTTGCTTATCGGTGAACCAATGCTGATCATTGCCCCGACACCGCCACAATGTTGTGAGGCTGTTGCTAGTCTTGTTAGTTTGGTTGCACCGTTGCTTTGTAGTGTTGATTTTAGGCCGTATTTTACAATTCATGACCCTGTGTTTGCACGACTAAACTCGATTCAAGAAGGTGAAACTTTCCCACCAATGATATTAGGTGTGACAAACCTTTTCTTCCTCAAAGCCCTTCGTAACATTCCACATATTGTCTCGGTTGGAAGCCCTCCACCTAATTCAAACCGACTTCCTCTATCGAGCAGGTCCGCTACTGGAAGAGTTTCTGGTAAACCTGAAGGTCTTGGGATTCAACAACTCTCTTTAAGAAAATTTTCTCCTTCAAGTTTATTGAATGCAGTTAAGATGCGAAGAGACGGTCCTCTTTGTCTAATGACCGAACATAAGGAGGCCATTTGGAGTACTTATTCTGCTACGACTAAGCCAGATACTTCTATATTAAATAGGCTTATAGATGCTGGGTTGTCACCAAGAGTTGAGGAGTCAATGTCTGTTGTGAACAATGAGATATTACGGCGACATTTTTTAGAGCTCACTACTAATTTTTTGGCACCCTTTTCCCCATATTTTAGGACTACAATGCCATTAGAAGGATCTTCTCCTTACACAGACCCTCCTTCTTTACCTCCATTTGATGCCAATGAGTTTCTTGCTAGTTTATCTGCAAGAGGTCCAGGGAAGTTCATTTTAAAGCGAATGAAATCTAACTGGCTTGACTTATACAGGCGATTCCTGAATGGACCTAACTTTATGCCATGGTTTCAAAGACGGCGTGCTGTTTCTGTGCAAGAGCAAGAGAGATTGTGGAGGCAAGCAAGGATAAAAACCGACATACATCAGCTTATTTCTAAATTTTCCGAGGTTGAAATTGTGGATTCCTTCAATGCTATAGAGAGACTTCTCCTCAAAGAAATACAGATGCAGCAATCTGGAAAGGACGGTGATGATTCGATGGTTACAAGTCAGAAATTAAGGGGAGACCTCCAAGCAGTTTTCAATGTACTTTCAAAGGACATGCAACAGCTTATGCTTTCAAATCCCCAAAGGGCATCTCTTCTTGATGGAAGTCCATTGATACAAGTCGAAGCTGTGTCTTCTACGTCACCACCGAGGGATGTTATTCATTCAACTGACAGCGATTCATTGGATGCATCTAGTGCTGAACACAGTGATGATGCTGGATATAGTGATGATGAAGATTGTAACTATGATGTATCCGATGAAGACCAAAGTTCAGATGATGAAGATGTTGCTGATAATTACGATGGCTCTGAAGCAATTGAATCGGAAGAGCCAAATCAGGAAGTACCTGTGGGTGAACATATGGTAAGGATTAATTCCCTTACTGCTGAGGAAATTCGTGGTTTGGAATTTGGAAATTGCGATGAAGCATATGAATTTTACTATCAATACGGTAAATGTAAAGGATTTGCTATTAGGAGAAGCGATATGAGAAGAAAGCCCAAAGGTACTGGAATGATAGTAATGAATCAGTTTGTCTGCAACAAACGTGGATTTAGAGACGAGAAGTACTTAAATAAGGTAGATAGGAAAAGACGTGACCAACGTCTGAGCCGTACCAACTGCACTGCTAGGATCCGTGTGCGGTACAGAGCCGAAAATGGCAAATATGCAGTCTCATGTTTTGAAGAAACACATAACCATGAATTAACTCCATCTAAATTGGTGCACTTACACCCTGTTTATCGCAAGATTTCTGAAGCAGATAAAGCTCAAATTGACGGTCTTCAGTCACATGGAATCAAAACTTGTCATATAATGGGATACATGGTTGCTCAAAAGGGTGGATATTCTGGTGTTGGAGTTGTCACAGACGGAGATGGGGCCATGAGGGAGGCTATAAAGCAGCTTTTTCCTACTGCAACGCATAGATTGTCGATGTTGTCAAATTTTACACCTGAGCAATTTGAAGATTTTTGGTCAGAGTTAGTGAAGAAGCATCAAGTTGAAAAACATCCTTGGATTGTCAAAACATATGACAACAAGTTACTTTGGGCAAGTGCATATCTACGGAATAAGTTCTTTGGTCGTATAAGAACTACCTCTCAATGTGAAGCAATCAATGCAATAATCAAAAGTTATGTAAGGAAGAAAGGGTCCATTTTTGAATTCATGCATAATTATGACGAGGCACTGACAGGGTACAGAAACAATGAACTAGCTGCTGCATTAATTGTGAAGGAAAAACATGATTTTGGGGATACCTTGGTATATAGCTTGACAAAATACTGTGAAGTTGGTTTTGTTAGAGAAGTTGCCTATGATGTTGAAAATAAATCATTTCAATGTTCGTGCCGATTGTTCGACTCTCGCGGAATTCCATGCTCTCACATTATTTATGTGATGAAGGAAGGGCACATTCAACAAATTCCTGATAGTTTGATTTTGTCCCGGTGGACTAAGGATGCCAAAGTAGGGGTGCTGAACTTGGATTCTACTGGCGACGTAGATTGCAATTTGATTGAGCAAGCTCGTTTTGGTTCTTATTGTTCTGCTTTCACTTCTCTTTGCAAAGAAGCCTCCAGCAAAAATGGAATTTATGGGAATTTAATGGAGGACATTATTGTAGTTCTTCTGAGATTGGCTGCATCATAA 3432 0.405 MSRSPSFRVKTEVNPNVDSESLKQWVVAFCAIRFDLEQGQLVEECYPQGVLSNDQELEIAYSSFPDSVSQHQNRSSIHDCIFFFRICRQHFKSRFANANATSSHKDDSCEYLYGYVFNRQRHDERLKRGGEQKSVVILSHCPYSSVFRPLLQIVGPLFFDIGKKALEHIAAYVSKWPPPVPGQVMDLPIGNATLKVSLPPALSLPFENGLSFEESVVPLLANNNQSVVQGLFHDSDLFGSFRGLLLQLWLLWELLLIGEPMLIIAPTPPQCCEAVASLVSLVAPLLCSVDFRPYFTIHDPVFARLNSIQEGETFPPMILGVTNLFFLKALRNIPHIVSVGSPPPNSNRLPLSSRSATGRVSGKPEGLGIQQLSLRKFSPSSLLNAVKMRRDGPLCLMTEHKEAIWSTYSATTKPDTSILNRLIDAGLSPRVEESMSVVNNEILRRHFLELTTNFLAPFSPYFRTTMPLEGSSPYTDPPSLPPFDANEFLASLSARGPGKFILKRMKSNWLDLYRRFLNGPNFMPWFQRRRAVSVQEQERLWRQARIKTDIHQLISKFSEVEIVDSFNAIERLLLKEIQMQQSGKDGDDSMVTSQKLRGDLQAVFNVLSKDMQQLMLSNPQRASLLDGSPLIQVEAVSSTSPPRDVIHSTDSDSLDASSAEHSDDAGYSDDEDCNYDVSDEDQSSDDEDVADNYDGSEAIESEEPNQEVPVGEHMVRINSLTAEEIRGLEFGNCDEAYEFYYQYGKCKGFAIRRSDMRRKPKGTGMIVMNQFVCNKRGFRDEKYLNKVDRKRRDQRLSRTNCTARIRVRYRAENGKYAVSCFEETHNHELTPSKLVHLHPVYRKISEADKAQIDGLQSHGIKTCHIMGYMVAQKGGYSGVGVVTDGDGAMREAIKQLFPTATHRLSMLSNFTPEQFEDFWSELVKKHQVEKHPWIVKTYDNKLLWASAYLRNKFFGRIRTTSQCEAINAIIKSYVRKKGSIFEFMHNYDEALTGYRNNELAAALIVKEKHDFGDTLVYSLTKYCEVGFVREVAYDVENKSFQCSCRLFDSRGIPCSHIIYVMKEGHIQQIPDSLILSRWTKDAKVGVLNLDSTGDVDCNLIEQARFGSYCSAFTSLCKEASSKNGIYGNLMEDIIVVLLRLAAS 1143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03339 1143 MobiDBLite consensus disorder prediction 648 664 - -
Trre4g03339 1143 Pfam Stabilization of polarity axis 244 331 - -
Trre4g03339 1143 MobiDBLite consensus disorder prediction 665 701 - -
Trre4g03339 1143 MobiDBLite consensus disorder prediction 343 364 - -
Trre4g03339 1143 MobiDBLite consensus disorder prediction 343 359 - -
Trre4g03339 1143 MobiDBLite consensus disorder prediction 635 711 - -
Trre4g03339 1143 ProSiteProfiles Zinc finger SWIM-type profile. 1027 1065 IPR007527 GO:0008270
Trre4g03339 1143 ProSiteProfiles Tripartite DENN domain profile. 27 527 IPR037516 -
Trre4g03339 1143 SMART 26again6 1040 1067 IPR006564 GO:0008270
Trre4g03339 1143 Pfam FAR1 DNA-binding domain 738 830 IPR004330 -
Trre4g03339 1143 PANTHER UNCHARACTERIZED 11 619 IPR024224 GO:0005085
Trre4g03339 1143 Pfam SWIM zinc finger 1041 1058 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03339 Trre-Chr4 39798390 39809013 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre4g03339 FAR1 2.9e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03339 - - gmx:100782429 1035.79