Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03328 ATGGCACCAAAGAAAAGCAACAATGAAAGAAGAGTCTTCACCGAAGAAGACGATCTTACCATTCTAAAATCTATTCCCAATTTTATGTCAGAAACTGGAGAGACTGCCTATTCCACTGCTTTTCACACGTTTGTGAAAAACAACATTTGTGGTAACATCACATTTAAACAGCTGAACAGGAAGATTAGGGGTTTCAAGGCAAACTATAGAAAAAAAGGTGAAACATTCACCAAAACTCACCATAAGAAAGCTTTAAAGCTTTTCAAGAAGATCGATTGGGAAGCCAATGATGGAAGAAAATCTGGAGTCAAATCTACGAAAAAGGGATTGGAACATCAAGTTGCTCAAAAATCCAGAACTCGCTTGATTAGGATTGTCTTCTGGCTTAGGAAAATCATCTAA 402 0.3706 MAPKKSNNERRVFTEEDDLTILKSIPNFMSETGETAYSTAFHTFVKNNICGNITFKQLNRKIRGFKANYRKKGETFTKTHHKKALKLFKKIDWEANDGRKSGVKSTKKGLEHQVAQKSRTRLIRIVFWLRKII 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03328 133 PANTHER BNAANNG10740D PROTEIN-RELATED 4 109 IPR007592 GO:0006355
Trre4g03328 133 Pfam Protein of unknown function, DUF573 10 91 IPR007592 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03328 Trre-Chr4 39659376 39662060 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03328 4 91 GeBP Transcription Factor Family AT1G61730 34.043 3.09e-09 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Trre4g03328 DUF573 1.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03328 - K13211 cam:101512869 67.3958