Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03326 ATGGCACGAAGAAGAAAAGTTAAGAAAAGGGTTTGTGCCATTCCTCGTGCTCCTGATGGAAGTGCCTTTTTTAACTGTGGAACATGTGGGGTGTCTGTTGCTATTTCCTTGGCTGATATGCACTATTGTGAATCCAACAAGATGGAATTCAAAAGGTTTTTCGGAATTGTTGTCAAGCGAACTTTCCACAAAAACAATCAACAGCTCATCAAGAATCAACCCATTTCGCCTTACCGTCTTTTTATGGAAAGCTTCATGAAGGGTCAAGACATGGAAAATTATAATATTGAAATTGATAGGATTGGGTTTGAAAAGTGGAAAAATATGTCAGAGGAGGAGAAGCAACCATTTGTTTCTCGTGCTAGAGAATTGGACAATAAACACCAAGAAGCTTTGAAACAGGAGGCTGATGAGATCATAAAGGTAACTTGA 432 0.3889 MARRRKVKKRVCAIPRAPDGSAFFNCGTCGVSVAISLADMHYCESNKMEFKRFFGIVVKRTFHKNNQQLIKNQPISPYRLFMESFMKGQDMENYNIEIDRIGFEKWKNMSEEEKQPFVSRARELDNKHQEALKQEADEIIKVT 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03326 143 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 71 136 IPR009071 -
Trre4g03326 143 Gene3D High mobility group box domain 71 141 IPR036910 -
Trre4g03326 143 Pfam HMG (high mobility group) box 75 133 IPR009071 -
Trre4g03326 143 SUPERFAMILY HMG-box 60 134 IPR036910 -
Trre4g03326 143 CDD HMG-box_CMB1-like 73 132 - -
Trre4g03326 143 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 7 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03326 Trre-Chr4 39644426 39645302 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Trre4g03326 HMG_box 2.5e-06 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03326 - - psat:127115600 169.088