Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03325 ATGGCACGAAGAAGAAAAGTTAAGAAAAGGGTTTGTGCCATTCCTCGTGCTCCTGATGGAAGTGCCTTTTTTAACTGTGGAACATGTGGGGTGTCTGTTGCTATTTCCTTGGCTGATATGCACTATTGTGAATCCAACAAGATGGAATTCAAAAGGGAAAGCTTCATGAAGGGTCAAGACATGGAAAATTATAATATTGAAATTGATAGGATTGGGTTTGAAAAGTGGAAAAATATGTCAGAGGAGGAGAAGCAACCATTTGTTTCTCGTGCTAGAGAATTGGACAATAAACACCAAGAAGCTTTGAAACAGGAGGCTGATGAGATCATAAAGGTAACTTGA 342 0.3918 MARRRKVKKRVCAIPRAPDGSAFFNCGTCGVSVAISLADMHYCESNKMEFKRESFMKGQDMENYNIEIDRIGFEKWKNMSEEEKQPFVSRARELDNKHQEALKQEADEIIKVT 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03325 113 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 53 107 - -
Trre4g03325 113 Pfam HMG (high mobility group) box 61 103 IPR009071 -
Trre4g03325 113 Gene3D High mobility group box domain 21 107 IPR036910 -
Trre4g03325 113 SUPERFAMILY HMG-box 56 102 IPR036910 -
Trre4g03325 113 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 52 106 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03325 Trre-Chr4 39644426 39645302 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Trre4g03325 HMG_box 3.7e-06 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03325 - - psat:127115600 148.288