Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03319 ATGATCAGGTCTGATAATACAGTTGAAGTCACTCATGATGCTGACAATTCTAATGGTGAACTACCATTTGAGCCGTATGAAGGAATGGATTTTGCGTCATTTGAAGATGTAAAAAATTATTATACAAGATACACAAAGAAGAAAGGTTTTAGCTTTCGCTTGGGCCGCATTACTAAATCAAGAACAAATGGATTGAAAATTGGTCAGGAGATGCTGTGTTCAAAGGAGGGGTTTCGAGCTAAAAAGTGTGCAAAAGGAAACAACCCTACAACACATGATGAAACAAGGGTAGGATGCAAGGCAATGGTATATGTAAAGAAAAATGAAGATAGATGGATTATCTCTAGATTTATAAGAGACCATAATCACGCCCTTTTCTCTCCAGAAAGTTCACAATTGGCTAATTGCTTTTGGGTTGATTCAAGGTCTAGAATGAGTTATAAGTATTTTGGTAACTTTTGA 462 0.3615 MIRSDNTVEVTHDADNSNGELPFEPYEGMDFASFEDVKNYYTRYTKKKGFSFRLGRITKSRTNGLKIGQEMLCSKEGFRAKKCAKGNNPTTHDETRVGCKAMVYVKKNEDRWIISRFIRDHNHALFSPESSQLANCFWVDSRSRMSYKYFGNF 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03319 153 MobiDBLite consensus disorder prediction 1 21 - -
Trre4g03319 153 Pfam FAR1 DNA-binding domain 39 126 IPR004330 -
Trre4g03319 153 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 8 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03319 Trre-Chr4 39615931 39616392 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre4g03319 FAR1 4.7e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03319 - - tpra:123904109 175.252