Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre4g03307 | ATGGCTTTTTGGGGTGTTGAAATCAAACCTGGAAAGCCTTTTACTCACACATACGATGGTTCCAAAGGACGCCTTCACATTTCAATGGCCACTTTGGGACTTGGCACTGCAATTACGAAAAGCACACTGCAATGTAATGTGGGAAACAAAAGCCCTGTTTATCTTTGCTCTCTTTATCCTGGAAAAACTGAGTCGTTGCAATTGAATTTGGAGCTTGAGGAAGATGGTAATGTTATTTTCTCTGTCATTGGCCCTCGGAGTATTCATCTCTGCGGTTATTATCTTGCTCATGGCCGCTATACCAATACTCTTGATGAATCGGAATCATATGGAGAAGATATAGCTGATACAGAAACAGAGAAATCTGTTCACAGTGATGAAGATGACTATGATGATAGTTTTATTGATGATGACAGTGATCCAGCAGTTTTCTCACCATCTCCTATTTCCAATGAAGAGGATGCATCTTATGATAGCGGACGGAAAAGTGCGAAAGGCAGCCGAAGAAGGCTGAGGAAGAAGTACCAGTTGGTAGAGTCGGATGATGATATCAGTCTTGAAGAAAAGAAAATTGTAAATGACAATGTGCATGTACAATCTCAGGAAGTTGATAATGAAGATAGTCTACCAATTTCATCGATCTGCAAGAATAAAGCCTCTGGAAGGATCTTGGATCAGGAAATGGATGATATTGTTGACAAAGAAGCGGTCGATGCTGGCAAAAAAGACAATGAAGACCCTGAGAATAGTACTATTGAAACAAAATTGAAAACTGACAATGTTGTTACAGATAATCAGACTCATAGCAGGGAAGCTGAACCTTCAGACCACTTGGCAGTTCCTTGCACTGTTCTGAATGTTGGGGATATTAAAAAGTCAAAAAAGAAAAAGAAGGGAAAGGAAAAAGAAACCAAGAGTTCTTGTACTGACCGTTCCACCGAACTAGATAATGCTGCGCAAGATGAGCAAAAAATGAACACGGCCCAGGATCTCTTGGATCAGGAAATGGCCGATAATGTTGACAAAGAAGCAGTTGATGTTGGAAAAGAAGACGGTGAAGACCCTGAGAGTAGTACTATTGAAACAAAATTGAAAACTGACAATGTTGTTGCAGTTATTCAGACTCACAGGGAAGCTGAACCTTCAGATCCCTTAGCAGTTCCTTGCACTCTTCCGGATGTTGGGGATATTAAAAAGTCAAAAAAGAAAATGAAGGGAAAGGAGAAAGAAACCAAGAGTTCTTGTAATGGTCATTCCACCGAACTAGATAATTCTGCGCAAGATGAGCAAAAAATGAACACGGCCCAGGATCTTTTGGGTCAGGAAATGGCTGATAATGTTGACAAAGAAGCAGTTGATGCTGGCAATAATGAACAGCACCAGCAGCAAGCTGATGATAAGAAAGCTGAAACCGCGGATAAAATACTTCCTTCTTCACAGGTTGCTCAACGACAGGATGAAAAACCAAAGAGAAAAAGGAAAGAACGGTCAAAGGAGGAGACAATTTTTACTACTGATGATGCTTGTATTAGCAATGCTGTTAACCTGCCACAGGGAAATGAAGGCAATTATCAGGACATTGTTAATAGGGATGATAAGATTTCAGATAGTGTTGCACTACCTTCCACTGAAACGGATTCTCCAAAGAAAACAAAGAGGAGAAAAAAAGAACATAAAAACAAATCTTCACTTCCTGAAGGTGGCAATGGAAATGCCGAAGGTATCACTCAAGATGAGGAAGCCAACAAAGAGACAGCAGAGTCTGATAGTCTGATTCATAAACTTTCTGAAACGAAAGAGCAACATCAGAAGCTAACAATTGAAAACAGTGTGGACAATGGGGCTCAAGACAAGAAGGTTAAGAAAAAGAAGAAAAGTAAAAGTCAGGGCAGTGAAGTTGTAAATTCTGCTTTGCCTGTATCGGTTGAGCCAAGTACTGAGATGATGAAGGAGGATGGAAATAATACGGAGGATACAAAGTCTTCCCAAGTTAGAACATTGTCAAATGGACTAGTTATTGAAGAGCTAGAGACGGGGAAAGAAAATGGGAAAATTGCTGCATTAGGGAAAAAGATCAGCATCAATTACACTGGCAAGTTGAAGGAAAATGGTGCGGAGGTTGAGTCAAATGCTGGCCAAGCCTCTTTCAAATTTCGCCTTGGTAAAGGAGAAGTTATTGAGGGTTTGGATATTGGCCTTGAAGGCATGCGAGTTGGAGAAAAGAGAAGACTCATAATTCCACCATCAATGACGTCTAAGAAGAATGGTGACAGTGAAAATATACCGCCGAATTCATGGTTGATATATGAATTGGAACTTGTTAAAGTTCATTGA | 2334 | 0.4027 | MAFWGVEIKPGKPFTHTYDGSKGRLHISMATLGLGTAITKSTLQCNVGNKSPVYLCSLYPGKTESLQLNLELEEDGNVIFSVIGPRSIHLCGYYLAHGRYTNTLDESESYGEDIADTETEKSVHSDEDDYDDSFIDDDSDPAVFSPSPISNEEDASYDSGRKSAKGSRRRLRKKYQLVESDDDISLEEKKIVNDNVHVQSQEVDNEDSLPISSICKNKASGRILDQEMDDIVDKEAVDAGKKDNEDPENSTIETKLKTDNVVTDNQTHSREAEPSDHLAVPCTVLNVGDIKKSKKKKKGKEKETKSSCTDRSTELDNAAQDEQKMNTAQDLLDQEMADNVDKEAVDVGKEDGEDPESSTIETKLKTDNVVAVIQTHREAEPSDPLAVPCTLPDVGDIKKSKKKMKGKEKETKSSCNGHSTELDNSAQDEQKMNTAQDLLGQEMADNVDKEAVDAGNNEQHQQQADDKKAETADKILPSSQVAQRQDEKPKRKRKERSKEETIFTTDDACISNAVNLPQGNEGNYQDIVNRDDKISDSVALPSTETDSPKKTKRRKKEHKNKSSLPEGGNGNAEGITQDEEANKETAESDSLIHKLSETKEQHQKLTIENSVDNGAQDKKVKKKKKSKSQGSEVVNSALPVSVEPSTEMMKEDGNNTEDTKSSQVRTLSNGLVIEELETGKENGKIAALGKKISINYTGKLKENGAEVESNAGQASFKFRLGKGEVIEGLDIGLEGMRVGEKRRLIIPPSMTSKKNGDSENIPPNSWLIYELELVKVH | 777 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre4g03307 | 777 | MobiDBLite | consensus disorder prediction | 484 | 503 | - | - | |
| Trre4g03307 | 777 | MobiDBLite | consensus disorder prediction | 222 | 253 | - | - | |
| Trre4g03307 | 777 | Pfam | Nucleoplasmin-like domain | 3 | 95 | IPR041232 | - | |
| Trre4g03307 | 777 | PANTHER | FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA | 41 | 434 | - | - | |
| Trre4g03307 | 777 | MobiDBLite | consensus disorder prediction | 319 | 333 | - | - | |
| Trre4g03307 | 777 | MobiDBLite | consensus disorder prediction | 114 | 128 | - | - | |
| Trre4g03307 | 777 | MobiDBLite | consensus disorder prediction | 577 | 606 | - | - | |
| Trre4g03307 | 777 | MobiDBLite | consensus disorder prediction | 395 | 416 | - | - | |
| Trre4g03307 | 777 | MobiDBLite | consensus disorder prediction | 109 | 172 | - | - | |
| Trre4g03307 | 777 | MobiDBLite | consensus disorder prediction | 335 | 361 | - | - | |
| Trre4g03307 | 777 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 686 | 774 | IPR001179 | GO:0003755 | |
| Trre4g03307 | 777 | Gene3D | Nucleoplasmin core domain | 1 | 99 | - | - | |
| Trre4g03307 | 777 | MobiDBLite | consensus disorder prediction | 504 | 525 | - | - | |
| Trre4g03307 | 777 | Gene3D | - | 640 | 777 | IPR046357 | GO:0003755 | |
| Trre4g03307 | 777 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 689 | 777 | IPR001179 | GO:0003755 | |
| Trre4g03307 | 777 | MobiDBLite | consensus disorder prediction | 443 | 473 | - | - | |
| Trre4g03307 | 777 | MobiDBLite | consensus disorder prediction | 377 | 664 | - | - | |
| Trre4g03307 | 777 | MobiDBLite | consensus disorder prediction | 417 | 440 | - | - | |
| Trre4g03307 | 777 | SUPERFAMILY | FKBP-like | 648 | 776 | - | - | |
| Trre4g03307 | 777 | MobiDBLite | consensus disorder prediction | 220 | 365 | - | - | |
| Trre4g03307 | 777 | MobiDBLite | consensus disorder prediction | 302 | 318 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre4g03307 | Trre-Chr4 | 39181957 | 39189691 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre4g03307 | 689 | 774 | Calmodulin-binding Proteins | AT5G48570 | 36.782 | 9.47e-12 | 66.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre4g03307 | K14826 | - | jre:109006154 | 426.402 |