Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03305 ATGGCTTTTTGGGGTGTTGAAATCAAACCTGGAAAGCCTTTTACTCACACATACGATGGTTCCAAAGGACGCCTTCACATTTCAATGGCCACTTTGGGACTTGGCACTGCAATTACGAAAAGCACACTGCAATGTAATGTGGGAAACAAAAGCCCTGTTTATCTTTGCTCTCTTTATCCTGGAAAAACTGAGTCGTTGCAATTGAATTTGGAGCTTGAGGAAGATGGTAATGTTATTTTCTCTGTCATTGGCCCTCGGAGTATTCATCTCTGCGGTTATTATCTTGCTCATGGCCGCTATACCAATACTCTTGATGAATCGGAATCATATGGAGAAGATATAGCTGATACAGAAACAGAGAAATCTGTTCACAGTGATGAAGATGACTATGATGATAGTTTTATTGATGATGACAGTGATCCAGCAGTTTTCTCACCATCTCCTATTTCCAATGAAGAGGATGCATCTTATGATAGCGGACGGAAAAGTGCGAAAGGCAGCCGAAGAAGGCTGAGGAAGAAGTACCAGTTGGTAGAGTCGGATGATGATATCAGTCTTGAAGAAAAGAAAATTGTAAATGACAATGTGCATGTACAATCTCAGGAAGTTGATAATGAAGATAGTCTACCAATTTCATCGATCTGCAAGAATAAAGCCTCTGGAAGGATCTTGGATCAGGAAATGGATGATATTGTTGACAAAGAAGCGGTCGATGCTGGCAAAAAAGACAATGAAGACCCTGAGAATAGTACTATTGAAACAAAATTGAAAACTGACAATGTTGTTACAGATAATCAGACTCATAGGGAAGCTGAACCTTCAGACCACTTGGCAGTTCCTTGCACTGTTCTGAATGTTGGGGATATTAAAAAGTCAAAAAAGAAAAAGAAGGGAAAGGAAAAAGAAACCAAGAGTTCTTGTACTGACCGTTCCACCGAACTAGATAATGCTGCGCAAGATGAGCAAAAAATGAACACGGCCCAGGATCTCTTGGATCAGGAAATGGCCGATAATGTTGACAAAGAAGCAGTTGATGTTGGAAAAGAAGACGGTGAAGACCCTGAGAGTAGTACTATTGAAACAAAATTGAAAACTGACAATGTTGTTGCAGTTATTCAGACTCACAGCAGGGAAGCTGAACCTTCAGATCCCTTAGCAGTTCCTTGCACTCTTCCGGATGTTGGGGATATTAAAAAGTCAAAAAAGAAAATGAAGGGAAAGGAGAAAGAAACCAAGAGTTCTTGTAATGGTCATTCCACCGAACTAGATAATTCTGCGCAAGATGAGCAAAAAATGAACACGGCCCAGGATCTTTTGGGTCAGGAAATGGCTGATAATGTTGACAAAGAAGCAGTTGATGCTGGCAATAATGAACAGCACCAGCAGCAAGCTGATGATAAGAAAGCTGAAACCGCGGATAAAATACTTCCTTCTTCACAGGTTGCTCAACGACAGGATGAAAAACCAAAGAGAAAAAGGAAAGAACGGTCAAAGGAGGAGACAATTTTTACTACTGATGATGCTTGTATTAGCAATGCTGTTAACCTGCCACAGGGAAATGAAGGCAATTATCAGGACATTGTTAATAGGGATGATAAGATTTCAGATAGTGTTGCACTACCTTCCACTGAAACGGATTCTCCAAAGAAAACAAAGAGGAGAAAAAAAGAACATAAAAACAAATCTTCACTTCCTGAAGGTGGCAATGGAAATGCCGAAGGTATCACTCAAGATGAGGAAGCCAACAAAGAGACAGCAGAGTCTGATAGTCTGATTCATAAACTTTCTGAAACGAAAGAGCAACATCAGAAGCTAACAATTGAAAATGTGGACAATGGGGCTCAAGACAAGAAGGTTAAGAAAAAGAAGAAAAGTAAAAGTCAGGGCAGTGAAGTTGTAAATTCTGCTTTGCCTGTATCGGTTGAGCCAAGTACTGAGATGATGAAGGAGGATGGAAATAATACGGAGGATACAAAGTCTTCCCAAGTTAGAACATTGTCAAATGGACTAGTTATTGAAGAGCTAGAGACGGGGAAAGAAAATGGGAAAATTGCTGCATTAGGGAAAAAGATCAGCATCAATTACACTGGCAAGTTGAAGGAAAATGGTGCGGAGGTTGAGTCAAATGCTGGCCAAGCCTCTTTCAAATTTCGCCTTGGTAAAGGAGAAGTTATTGAGGGTTTGGATATTGGCCTTGAAGGCATGCGAGTTGGAGAAAAGAGAAGACTCATAATTCCACCATCAATGACGTCTAAGAAGAATGGTGACAGTGAAAATATACCGCCGAATTCATGGTTGATATATGAATTGGAACTTGTTAAAGTTCATTGA 2331 0.4024 MAFWGVEIKPGKPFTHTYDGSKGRLHISMATLGLGTAITKSTLQCNVGNKSPVYLCSLYPGKTESLQLNLELEEDGNVIFSVIGPRSIHLCGYYLAHGRYTNTLDESESYGEDIADTETEKSVHSDEDDYDDSFIDDDSDPAVFSPSPISNEEDASYDSGRKSAKGSRRRLRKKYQLVESDDDISLEEKKIVNDNVHVQSQEVDNEDSLPISSICKNKASGRILDQEMDDIVDKEAVDAGKKDNEDPENSTIETKLKTDNVVTDNQTHREAEPSDHLAVPCTVLNVGDIKKSKKKKKGKEKETKSSCTDRSTELDNAAQDEQKMNTAQDLLDQEMADNVDKEAVDVGKEDGEDPESSTIETKLKTDNVVAVIQTHSREAEPSDPLAVPCTLPDVGDIKKSKKKMKGKEKETKSSCNGHSTELDNSAQDEQKMNTAQDLLGQEMADNVDKEAVDAGNNEQHQQQADDKKAETADKILPSSQVAQRQDEKPKRKRKERSKEETIFTTDDACISNAVNLPQGNEGNYQDIVNRDDKISDSVALPSTETDSPKKTKRRKKEHKNKSSLPEGGNGNAEGITQDEEANKETAESDSLIHKLSETKEQHQKLTIENVDNGAQDKKVKKKKKSKSQGSEVVNSALPVSVEPSTEMMKEDGNNTEDTKSSQVRTLSNGLVIEELETGKENGKIAALGKKISINYTGKLKENGAEVESNAGQASFKFRLGKGEVIEGLDIGLEGMRVGEKRRLIIPPSMTSKKNGDSENIPPNSWLIYELELVKVH 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03305 776 MobiDBLite consensus disorder prediction 484 503 - -
Trre4g03305 776 Pfam Nucleoplasmin-like domain 3 95 IPR041232 -
Trre4g03305 776 MobiDBLite consensus disorder prediction 114 128 - -
Trre4g03305 776 MobiDBLite consensus disorder prediction 395 416 - -
Trre4g03305 776 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 41 775 - -
Trre4g03305 776 MobiDBLite consensus disorder prediction 290 321 - -
Trre4g03305 776 MobiDBLite consensus disorder prediction 109 172 - -
Trre4g03305 776 MobiDBLite consensus disorder prediction 226 277 - -
Trre4g03305 776 MobiDBLite consensus disorder prediction 336 360 - -
Trre4g03305 776 MobiDBLite consensus disorder prediction 504 525 - -
Trre4g03305 776 Gene3D - 639 776 IPR046357 GO:0003755
Trre4g03305 776 MobiDBLite consensus disorder prediction 226 253 - -
Trre4g03305 776 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 688 776 IPR001179 GO:0003755
Trre4g03305 776 MobiDBLite consensus disorder prediction 376 663 - -
Trre4g03305 776 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 685 773 IPR001179 GO:0003755
Trre4g03305 776 SUPERFAMILY FKBP-like 646 775 - -
Trre4g03305 776 MobiDBLite consensus disorder prediction 443 473 - -
Trre4g03305 776 MobiDBLite consensus disorder prediction 301 317 - -
Trre4g03305 776 MobiDBLite consensus disorder prediction 417 440 - -
Trre4g03305 776 Gene3D Nucleoplasmin core domain 1 99 - -
Trre4g03305 776 MobiDBLite consensus disorder prediction 577 618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03305 Trre-Chr4 39181957 39189691 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03305 688 773 Calmodulin-binding Proteins AT5G48570 36.782 9.70e-12 66.6