Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03297 ATGGCTGTGGAGAATCAAAAAGAAGATGGAGTCATTAACCGTTTTCCTATTGTGGGTATGCGTGTTCTTGCTGTTGATGACAACCCAACTTGTCTCAAAGTTTTGGACCAATTGCTTCGTCAATGCCAATATCATGTTACTACTGCTACAAATACAATTGAAGCACTGACAATGTTGAGGGAAAACAGAAATAACTTTGACTTGGTTATTAGTGATGTTGATATGCCCGATATGGATGGATTTAAGCTCCTTGAGATGGTGGGACTTGAAATGGACTTACCTGTCATCATGTTGTCGGGACATGGTGATAAAAACATGGTGTACAAGGGTATTTCACACGGTGCATGTGACTATTTGGTGAAACCTGTTCGACTTTCAGAGCTCCAGAACATATGGCAACACGTAGTCCGAAAACAAGCAACTACTTCCAAGGATCAGAATAGGAACCCTAATATTTCAGGGGGAAATAGTCAACAGAATAAAAACTTAGGTAAAAGAAGGAAGGACCAAGCTGAGGAGGAAGAAAATGAAGAAGGTGAAGGGACTGGAGATGAGAATGACCCCTCATCGCAGAAGAAATCTCGTGTGGTTTGGTCTGTCGATCTGCATAGGAAATTTGTTAGTGCGGTTAATCAACTCGGCTTAGAAAAGGCTGTTCCGAAGAAAATACTTGACCTGATGAATGATGAAAGGCTTACCAGGGAAAATGTCGCAAGCCATCTGCAGAAATTTAGACTCTATCTGAAAAAGGCAAACTATCATCAAACTAACATGGTTGTTGGATTGGGTGGTGGTGGTAACGATTCTTACCTTCAGATAAATGGAATGGATGGATATGCAGATTTCTGCACCTCAACTGGATCTGGAAGGTTCTCAAGCACCTCAATGCCATCATATGCATCAAACGCAGTTTTCGGTAGGCTGAACTCTCTAGCTGGCTTTAACATGAGAGGAATGAGTTCTTCAATGCTGGTTCAGCCTATTCCGTCTCAAAACATCAACAACTCCTGGATTCCTGCAAATCAAAGCTCAAGCTTTTTGCATGGCATTCCAACTGAGCTTAACCAATCTAAGCTAAACAATTGTGCAACTGGTATATCACAGTTAACTCAAATAGATTCCACTGGATTTGCAGTTCCGTCTGGCTTCCACGATATTAGGGATACTCTTGATAATGCAAACAGTCCTCCACAACTCTCAAACCACCATTTAATGATGAATGGATATTCACAGCAGACACACAATGCAGGGTCATTTAGAAATCAGTCTTCAGTTGGATCTGCTTCTTTGGGAAACACAAACATTGGCATTTGTGGTTCTTCTAATTTGTTGGATTATAATCACTGCAATGAAAACTGGCAAAGTCAAGTTCAGCTACCTAAATTTCCTGCCAATTATTTTCCAGTATGCGAGTCTTTCAATGGCAACCAACTGCCTCGCACTAGCATTACTGCTTTTAACCCAAGAGCTCCTGTCGGTGACAATCAAGTTAACTTTTCATCTGGAAATGCAATCACTGCTACTTTGGAGGATGCCAGAAATATGCCAAGTTTCCAAGAAGGCGGCTTGATTGGGAATGTTATACAGCCTACAAGTTACGCTATGCAACGAAGGTGGGAAGAACATAGAGTTGATTACAGCCAAAACATGATCCGTCCCTTCAATCCTGTAAATTCACAGGTTTCTTCCAGCAGGGCATTGACAGATATTGTGGCGCATAATACAAACCAAAGCAAAACAGTTTGCAACAATGGAGTTGATGCTTCTTTTGTTGATCAAGTAAATGGCACTTCTTCGTCAAAAAAAAAAAAGTAA 1815 0.4099 MAVENQKEDGVINRFPIVGMRVLAVDDNPTCLKVLDQLLRQCQYHVTTATNTIEALTMLRENRNNFDLVISDVDMPDMDGFKLLEMVGLEMDLPVIMLSGHGDKNMVYKGISHGACDYLVKPVRLSELQNIWQHVVRKQATTSKDQNRNPNISGGNSQQNKNLGKRRKDQAEEEENEEGEGTGDENDPSSQKKSRVVWSVDLHRKFVSAVNQLGLEKAVPKKILDLMNDERLTRENVASHLQKFRLYLKKANYHQTNMVVGLGGGGNDSYLQINGMDGYADFCTSTGSGRFSSTSMPSYASNAVFGRLNSLAGFNMRGMSSSMLVQPIPSQNINNSWIPANQSSSFLHGIPTELNQSKLNNCATGISQLTQIDSTGFAVPSGFHDIRDTLDNANSPPQLSNHHLMMNGYSQQTHNAGSFRNQSSVGSASLGNTNIGICGSSNLLDYNHCNENWQSQVQLPKFPANYFPVCESFNGNQLPRTSITAFNPRAPVGDNQVNFSSGNAITATLEDARNMPSFQEGGLIGNVIQPTSYAMQRRWEEHRVDYSQNMIRPFNPVNSQVSSSRALTDIVAHNTNQSKTVCNNGVDASFVDQVNGTSSSKKKK 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03297 604 PIRSF RR_ARR_type-B 1 603 IPR017053 GO:0003677|GO:0003700|GO:0009736
Trre4g03297 604 MobiDBLite consensus disorder prediction 139 161 - -
Trre4g03297 604 Pfam Response regulator receiver domain 22 130 IPR001789 GO:0000160
Trre4g03297 604 FunFam Two-component response regulator 189 252 - -
Trre4g03297 604 SUPERFAMILY CheY-like 19 146 IPR011006 -
Trre4g03297 604 SUPERFAMILY Homeodomain-like 191 250 IPR009057 -
Trre4g03297 604 PANTHER TWO-COMPONENT RESPONSE REGULATOR 20 341 IPR045279 GO:0009736
Trre4g03297 604 Gene3D - 19 153 - -
Trre4g03297 604 ProSiteProfiles Response regulatory domain profile. 21 136 IPR001789 GO:0000160
Trre4g03297 604 CDD REC_typeB_ARR-like 22 136 - -
Trre4g03297 604 SMART REC_2 20 132 IPR001789 GO:0000160
Trre4g03297 604 Gene3D - 189 251 - -
Trre4g03297 604 NCBIfam myb-like DNA-binding domain, SHAQKYF class 193 246 IPR006447 GO:0003677
Trre4g03297 604 MobiDBLite consensus disorder prediction 139 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03297 Trre-Chr4 39092097 39094756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03297 1 381 Response Regulator Gene Family AT2G25180 50.369 4.73e-111 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Trre4g03297 Response_reg 6.3e-25 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03297 K14491 - psat:127085782 713.761