LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre4g03296	ATGGAAAGTTCCAAAAACAATAAAGTGGAGAAAAGAAGTTATGATGATGATGATGATGATAATACACAACACCATCTTGCTCAGTCCAAGAAGCCAAAACTACCTGGTTTAGCTAGTGTAATTGTGGAAGCTTTGAAGGTTGATAGTTTGCAAAGACTCTGCTCATCTTTGGAACCACTTCTCAGGAAAATTGTCAGTGAAGAAGTGGAGCGTGCTTTGGCGAAATTGGACCATGCCAAACTCGGTGATAGGTCTTCAATACAAAGAATAGAAGCACCAAGGGAAAAGAATCTGCAGCTTCATTTCAGAACAAGAATGCCACCACACTTGTTCACAGGAGGGAAAGTTGAGGGAGAGCAAGGAGCGGTCATCCATGTTGTTTTGTTAGATCCGAACACCGGCAATGTTGTTCAAGTTGGACCAGAATCAGTTGCTAAGTTGAATGTTGTTGTACTCGAAGGTGATTTTAATGACGAAGTTGATGATGATTGGACAAAAGAGCACTTTGAAAGCCATGAGGTAAAGGAACGCGATGGGAAAAGACCACTTTTAAATGGAGATTTTCATGTTAGCTTAAAGGAAGGAGTAGGAACATTAGGTGATCTTTCTTTCACCGACAATTCTAGCTGGATAAGAAGCAGAAAATTCAGGCTTGGTGTTACGGTGGCGCCTGGGTATTGTGACGGGATTCGAGTGCGTGAGGGAAAGACCGAAGCATTTGCTGTTAAAGATCATAGAGGAGAATTATACAAGAAACACTATCCACCTGCTTTGCATGATGAAGTTTGGAGATTGGATCGGATAGCGAAGGATGGTGCACTTCACAAAAAATTGATTCAATCAAGAATAGTAACTGTAGAAGATTTCTTGCGTCTTCTTGTCCGCGAACCTCAGAAATTAAGAAGCATACTTGGCAGTGGAATGTCAAACAGAATGTGGGAGAACACTGTGGAGCATGCAAAGACATGTGTCTTGGGTACTAAGCTATTTATTTACTACACTGATGAAACTAATAGCACTGGAATTATGTTTAACAACATTTATGAGCTGAGAGGCCTCATTGCAGATGGCCAGTTCTACTCTTTAGAATCCCTTACTCCAAATCAAAAGATGTCTGTGGATTCTTTGGTGAAAAAAGCATATGATAATTGGGACCAAGTCATAGAATATGATGGAAAAGTTTTAAATTCTTTGACTAATTCAAAAAGGGGATCAAGATCTGTAGCAACTCATACAATAATGCATCACAACAATTTCCAAGAGCAGCAGTACAAATCTGCAAAGGGAAGAGCGTCCTATGTCTCATCCGAACCAAATCAACATTTACAAATAACAAATAACTACTCATCAAATCCTGATTATCAGATGGTTGGGACATCGATAAATGACTCACAAATAGCATTACAAGGAACCATGAATTACAATATGATAAGTGATAATAATCCTGAAAACGGAGGTAGTTATTATCACGGAGACTGGTCTAGGCAAAGAAATGGACAAGGGTTGGAAGACATTGTCGCCGAAGAGCTTCGACTTAGAAGCTCACAGATGCTGGAGGGTGATGATATGCAGAGGTTACTTAAGACAATTAATGAAGGGACTAATTTTGGTCATTCTAATGAGAGTTGTTACACCTACAGACTTCAGTATGAGCCTCAAATGTATCATTCCTTTGTTGAGGATCCTGTCAAGTGCTCCGGGAAGGCCGTTGTTGGGTGGCTTAAGCTCAAAGCAGCTTTAAGGTGGGGAATATTTATCAGAAAAAAAGCTGCAGAAAGAAGAGCACAGCTTACTGAGTTGAATTGA	1806	0.4009	MESSKNNKVEKRSYDDDDDDNTQHHLAQSKKPKLPGLASVIVEALKVDSLQRLCSSLEPLLRKIVSEEVERALAKLDHAKLGDRSSIQRIEAPREKNLQLHFRTRMPPHLFTGGKVEGEQGAVIHVVLLDPNTGNVVQVGPESVAKLNVVVLEGDFNDEVDDDWTKEHFESHEVKERDGKRPLLNGDFHVSLKEGVGTLGDLSFTDNSSWIRSRKFRLGVTVAPGYCDGIRVREGKTEAFAVKDHRGELYKKHYPPALHDEVWRLDRIAKDGALHKKLIQSRIVTVEDFLRLLVREPQKLRSILGSGMSNRMWENTVEHAKTCVLGTKLFIYYTDETNSTGIMFNNIYELRGLIADGQFYSLESLTPNQKMSVDSLVKKAYDNWDQVIEYDGKVLNSLTNSKRGSRSVATHTIMHHNNFQEQQYKSAKGRASYVSSEPNQHLQITNNYSSNPDYQMVGTSINDSQIALQGTMNYNMISDNNPENGGSYYHGDWSRQRNGQGLEDIVAEELRLRSSQMLEGDDMQRLLKTINEGTNFGHSNESCYTYRLQYEPQMYHSFVEDPVKCSGKAVVGWLKLKAALRWGIFIRKKAAERRAQLTELN	601

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre4g03296	601	Pfam	Calmodulin binding protein C-terminal domain	328	390	IPR046829	-
	Trre4g03296	601	Pfam	Calmodulin binding protein central domain	257	323	IPR046830	-
	Trre4g03296	601	PANTHER	OS02G0177800 PROTEIN	11	523	IPR012416	GO:0005516
	Trre4g03296	601	MobiDBLite	consensus disorder prediction	1	27	-	-
	Trre4g03296	601	MobiDBLite	consensus disorder prediction	1	32	-	-
	Trre4g03296	601	Pfam	Calmodulin binding protein-like N-terminal domain	98	245	IPR046831	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre4g03296	Trre-Chr4	39088081	39091216	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre4g03296	1	601	Calmodulin-binding Proteins	AT2G24300	60.353	0.0	719

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre4g03296	-		-	tpra:123882842	1167.53