Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03284 ATGTTCTTTATAGGTTATAATGAATTCTGCTTTGTGCTTTCTTCATCTGTTTTGTATTTGCAGCTGACTATGTGGGACTTGAGAATGAAAGAAAACGGTGGTTGTGTTCATCAGATTAGTGGTACCCCTGGTGATACCTTATATTCTGTTTGCAGTTCTTCCACTGGTAATATTGCCGTTGGTGGGGTTGATCGTACAGTGACTATTTATGATCCTCGCAGATGGTCCTCATTGTCTAGATGGGTGCATTGTTCAAAATTTGAGGTGATTTTGATCTCATTCTCAACTTGGCTTGCCTGGTTTTTAGCTGGAAAATATCATGCTTACCTAAAATCGTGGATATCGTCTTCCATGGACAGCTTTGAGCTTGCTTTGCAGTTTGGAATATCTGTTATTGTTATTGCCTGCCCTTGTGCTTTGGGTTTAGTCACGCCTACTGCTGTTATGGTTGGCACCGGTGTTGGTGCATCTCAGGGTGTATTGATCAAAGGGGGGCAAGCTTTGGAAAGTGCACATAAGGTAAATTGCATTGTTTTTGACAAGACGGGTACTCTCACTATTGGGAAACCGGTAATAGTAAATACCAAACTATTGACAAAAATGGTGCTCCGGGAATTCTATGAAATTGTGGCTGCAGCAGACGTAAGCACATGCCCCCCATCTCCTTGTAAAAGCCTTAGCCTCAGTAATAGTTATAGAGAACAGTTGTTTTCCTATTAA 720 0.4139 MFFIGYNEFCFVLSSSVLYLQLTMWDLRMKENGGCVHQISGTPGDTLYSVCSSSTGNIAVGGVDRTVTIYDPRRWSSLSRWVHCSKFEVILISFSTWLAWFLAGKYHAYLKSWISSSMDSFELALQFGISVIVIACPCALGLVTPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTIGKPVIVNTKLLTKMVLREFYEIVAAADVSTCPPSPCKSLSLSNSYREQLFSY 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03284 239 Pfam E1-E2 ATPase 89 156 - -
Trre4g03284 239 ProSitePatterns E1-E2 ATPases phosphorylation site. 180 186 IPR018303 -
Trre4g03284 239 Gene3D - 7 125 IPR015943 GO:0005515
Trre4g03284 239 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 89 217 - -
Trre4g03284 239 SUPERFAMILY Calcium ATPase, transmembrane domain M 84 170 IPR023298 -
Trre4g03284 239 SUPERFAMILY WD40 repeat-like 22 113 IPR036322 GO:0005515
Trre4g03284 239 Gene3D - 144 216 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03284 Trre-Chr4 38876535 38877991 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03284 89 235 Primary Pumps ATPases AT1G63440 75.510 3.40e-70 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03284 K17686 - gmx:100810141 234.958