Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03271 ATGGCTTTTCATCACGACCATCTATCAAACGAAATCAATTTTCAACCATTCAATGAAGAGCAACAGTTAAGTCAAAGCAGAGACATGCAAAGACTACTACCATTCAACGGCGGCGGTGGAGGTGGATCAGCACCGACGTGGCTGAACAACGCTGTAACCTTACGGCAGCAGAATTTCCTCCACTTACAACCAGACACATCACAAAACGACGATGTGAGAGGAATGAATAGGGATCGGGGCCGGACGACGGAGAGCAGTCACAACGAATCAGAGGAGTTATCTTTATCACAATACAAAGCAGACATTCTTGGACATCCCCTCTATGATCAGCTTTTATCTGCTCATGTTTCGTGTCTGCGAATTGCGACGCCTGTCGATCAGCTTCCGCGGATCGACGCACAGCTTCAGCAATCGCAGCGTGTGGTGGATAAGTACTCTTCACTTGCTAATGGTGTTGTGGATGAGAAAGAGCTTGATCAATTCATGACGCATTATGTTCTCCTGCTTTGTGCATTTAAAGAACAATTGCAACAACATGTTCGTGTTCATGCCATGGAAGCCGTTATGGCTTGTTGGGAGCTGGAACAGTCTCTACAAAGCTTGACCGGTGTATCTCCCGGTGAAGGGAGTGGTGCAACCATGTCGGACGATGAAGACGACCAAGCAGCAGAGAGCAATGCAAACTTATATGAAGGAAGCCTTGATGGTGGTGATAGTCTCACCTTTGGCCCTCTTGTTCCCACCGAAAGTGAAAGATCTTTAATGGAACGTGTGAGGCAGGAATTGAAGCATGAGCTAAAACAGGGTTACAAGAGTAAAATAGTTGACATAAGAGAAGAAATTCTACGGAAGAGAAGAGCGGGAAAGCTACCAGGTGATACAACTTCCCTTTTGAAAGCTTGGTGGCAGTCACACTCTAAATGGCCTTATCCCACAGAAGAAGACAAGGCGAGGTTGGTCCAAGAAACAGGACTTCAACTAAAGCAAATAAATAACTGGTTCATAAATCAAAGAAAAAGGAATTGGCATACTAATCCTTCCTCTTCCACCGGTTCTAAAACCAAGCGAAAGAGTAGTGGTGCAGGTGAAACAAGTAACCAGAGCTTCATGTGA 1113 0.4546 MAFHHDHLSNEINFQPFNEEQQLSQSRDMQRLLPFNGGGGGGSAPTWLNNAVTLRQQNFLHLQPDTSQNDDVRGMNRDRGRTTESSHNESEELSLSQYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSSLANGVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGSGATMSDDEDDQAAESNANLYEGSLDGGDSLTFGPLVPTESERSLMERVRQELKHELKQGYKSKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSTGSKTKRKSSGAGETSNQSFM 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03271 370 Pfam KNOX1 domain 98 139 IPR005540 GO:0003677|GO:0005634
Trre4g03271 370 SUPERFAMILY Homeodomain-like 283 347 IPR009057 -
Trre4g03271 370 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 85 352 - -
Trre4g03271 370 ProSiteProfiles ELK domain profile. 261 281 IPR005539 GO:0003677
Trre4g03271 370 SMART KNOX2_2 148 203 IPR005541 GO:0003677|GO:0005634
Trre4g03271 370 Pfam ELK domain 261 282 IPR005539 GO:0003677
Trre4g03271 370 Pfam Homeobox KN domain 301 340 IPR008422 GO:0003677|GO:0006355
Trre4g03271 370 FunFam homeobox protein knotted-1-like 3 isoform X1 282 343 - -
Trre4g03271 370 ProSiteProfiles 'Homeobox' domain profile. 281 344 IPR001356 GO:0003677
Trre4g03271 370 MobiDBLite consensus disorder prediction 71 88 - -
Trre4g03271 370 MobiDBLite consensus disorder prediction 338 370 - -
Trre4g03271 370 Gene3D - 287 363 - -
Trre4g03271 370 MobiDBLite consensus disorder prediction 61 93 - -
Trre4g03271 370 CDD homeodomain 284 345 IPR001356 GO:0003677
Trre4g03271 370 SMART ELK_2 261 282 IPR005539 GO:0003677
Trre4g03271 370 MobiDBLite consensus disorder prediction 203 222 - -
Trre4g03271 370 SMART HOX_1 283 348 IPR001356 GO:0003677
Trre4g03271 370 SMART KNOX1_2 96 140 IPR005540 GO:0003677|GO:0005634
Trre4g03271 370 Pfam KNOX2 domain 153 202 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03271 Trre-Chr4 38595434 38605275 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03271 89 365 Homeobox Transcription Factor Family AT5G11060 81.851 2.86e-164 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Trre4g03271 KNOX2 2.6e-19 No_clan