Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03270 ATGGCTTTTCATCACGACCATCTATCAAACGAAATCAATTTTCAACCATTCAATGAAGAGCAACAGTTAAGTCAAAGCAGAGACATGCAAAGACTACTACCATTCAACGGCGGCGGTGGAGGTGGATCAGCACCGACGTGGCTGAACAACGCTGTAACCTTACGGCAGCAGAATTTCCTCCACTTACAACCAGACACATCACAAAACGACGATGTGAGAGGAATGAATAGGGATCGGGGCCGGACGACGGAGAGCAGTCACAACGAATCAGAGGAGTTATCTTTATCACAATACAAAGCAGACATTCTTGGACATCCCCTCTATGATCAGCTTTTATCTGCTCATGTTTCGTGTCTGCGAATTGCGACGCCTGTCGATCAGCTTCCGCGGATCGACGCACAGCTTCAGCAATCGCAGCGTGTGGTGGATAAGTACTCTTCACTTGCTAATGGTGTTGTGGATGAGAAAGAGCTTGATCAATTCATGACGCATTATGTTCTCCTGCTTTGTGCATTTAAAGAACAATTGCAACAACATGTTCGTGTTCATGCCATGGAAGCCGTTATGGCTTGTTGGGAGCTGGAACAGTCTCTACAAAGCTTGACCGGTGTATCTCCCGGTGAAGGGAGTGGTGCAACCATGTCGGACGATGAAGACGACCAAGCAGCAGAGAGCAATGCAAACTTATATGAAGGAAGCCTTGATGGTGGTGATAGTCTCACCTTTGGCCCTCTTGTTCCCACCGAAAGTGAAAGATCTTTAATGGAACGTGTGAGGCAGGAATTGAAGCATGAGCTAAAACAGGGTTACAAGAGTAAAATAGTTGACATAAGAGAAGAAATTCTACGGAAGAGAAGAGCGGGAAAGCTACCAGGTGATACAACTTCCCTTTTGAAAGCTTGGTGGCAGTCACACTCTAAATGGCCTTATCCCACAGAAGAAGACAAGGCGAGGTTGGTCCAAGAAACAGGACTTCAACTAAAGCAAATAAATAACTGGTTCATAAATCAAAGAAAAAGGAATTGGCATACTAATCCTTCCTCTTCCACCGGTTCTAAAACCAAGCGAAAGAGTGGTGCAGGTGAAACAAGTAACCAGAGCTTCATGTGA 1110 0.455 MAFHHDHLSNEINFQPFNEEQQLSQSRDMQRLLPFNGGGGGGSAPTWLNNAVTLRQQNFLHLQPDTSQNDDVRGMNRDRGRTTESSHNESEELSLSQYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSSLANGVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGSGATMSDDEDDQAAESNANLYEGSLDGGDSLTFGPLVPTESERSLMERVRQELKHELKQGYKSKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSTGSKTKRKSGAGETSNQSFM 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03270 369 Pfam KNOX1 domain 98 139 IPR005540 GO:0003677|GO:0005634
Trre4g03270 369 ProSiteProfiles ELK domain profile. 261 281 IPR005539 GO:0003677
Trre4g03270 369 Pfam KNOX2 domain 153 202 IPR005541 GO:0003677|GO:0005634
Trre4g03270 369 SMART KNOX2_2 148 203 IPR005541 GO:0003677|GO:0005634
Trre4g03270 369 FunFam homeobox protein knotted-1-like 3 isoform X1 282 343 - -
Trre4g03270 369 ProSiteProfiles 'Homeobox' domain profile. 281 344 IPR001356 GO:0003677
Trre4g03270 369 MobiDBLite consensus disorder prediction 71 88 - -
Trre4g03270 369 Gene3D - 287 363 - -
Trre4g03270 369 MobiDBLite consensus disorder prediction 61 93 - -
Trre4g03270 369 Pfam Homeobox KN domain 301 340 IPR008422 GO:0003677|GO:0006355
Trre4g03270 369 CDD homeodomain 284 345 IPR001356 GO:0003677
Trre4g03270 369 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 85 349 - -
Trre4g03270 369 SMART ELK_2 261 282 IPR005539 GO:0003677
Trre4g03270 369 MobiDBLite consensus disorder prediction 203 222 - -
Trre4g03270 369 SMART HOX_1 283 348 IPR001356 GO:0003677
Trre4g03270 369 MobiDBLite consensus disorder prediction 338 369 - -
Trre4g03270 369 SMART KNOX1_2 96 140 IPR005540 GO:0003677|GO:0005634
Trre4g03270 369 Pfam ELK domain 261 282 IPR005539 GO:0003677
Trre4g03270 369 SUPERFAMILY Homeodomain-like 283 347 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03270 Trre-Chr4 38595434 38605275 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03270 89 364 Homeobox Transcription Factor Family AT5G11060 82.143 5.76e-166 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Trre4g03270 KNOX2 2.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03270 - - gmx:100816347 598.586