LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre4g03270	ATGGCTTTTCATCACGACCATCTATCAAACGAAATCAATTTTCAACCATTCAATGAAGAGCAACAGTTAAGTCAAAGCAGAGACATGCAAAGACTACTACCATTCAACGGCGGCGGTGGAGGTGGATCAGCACCGACGTGGCTGAACAACGCTGTAACCTTACGGCAGCAGAATTTCCTCCACTTACAACCAGACACATCACAAAACGACGATGTGAGAGGAATGAATAGGGATCGGGGCCGGACGACGGAGAGCAGTCACAACGAATCAGAGGAGTTATCTTTATCACAATACAAAGCAGACATTCTTGGACATCCCCTCTATGATCAGCTTTTATCTGCTCATGTTTCGTGTCTGCGAATTGCGACGCCTGTCGATCAGCTTCCGCGGATCGACGCACAGCTTCAGCAATCGCAGCGTGTGGTGGATAAGTACTCTTCACTTGCTAATGGTGTTGTGGATGAGAAAGAGCTTGATCAATTCATGACGCATTATGTTCTCCTGCTTTGTGCATTTAAAGAACAATTGCAACAACATGTTCGTGTTCATGCCATGGAAGCCGTTATGGCTTGTTGGGAGCTGGAACAGTCTCTACAAAGCTTGACCGGTGTATCTCCCGGTGAAGGGAGTGGTGCAACCATGTCGGACGATGAAGACGACCAAGCAGCAGAGAGCAATGCAAACTTATATGAAGGAAGCCTTGATGGTGGTGATAGTCTCACCTTTGGCCCTCTTGTTCCCACCGAAAGTGAAAGATCTTTAATGGAACGTGTGAGGCAGGAATTGAAGCATGAGCTAAAACAGGGTTACAAGAGTAAAATAGTTGACATAAGAGAAGAAATTCTACGGAAGAGAAGAGCGGGAAAGCTACCAGGTGATACAACTTCCCTTTTGAAAGCTTGGTGGCAGTCACACTCTAAATGGCCTTATCCCACAGAAGAAGACAAGGCGAGGTTGGTCCAAGAAACAGGACTTCAACTAAAGCAAATAAATAACTGGTTCATAAATCAAAGAAAAAGGAATTGGCATACTAATCCTTCCTCTTCCACCGGTTCTAAAACCAAGCGAAAGAGTGGTGCAGGTGAAACAAGTAACCAGAGCTTCATGTGA	1110	0.455	MAFHHDHLSNEINFQPFNEEQQLSQSRDMQRLLPFNGGGGGGSAPTWLNNAVTLRQQNFLHLQPDTSQNDDVRGMNRDRGRTTESSHNESEELSLSQYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSSLANGVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGSGATMSDDEDDQAAESNANLYEGSLDGGDSLTFGPLVPTESERSLMERVRQELKHELKQGYKSKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSTGSKTKRKSGAGETSNQSFM	369

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Trre4g03270	369	Pfam	KNOX1 domain	98	139	IPR005540	GO:0003677\|GO:0005634
Trre4g03270	369	ProSiteProfiles	ELK domain profile.	261	281	IPR005539	GO:0003677
Trre4g03270	369	Pfam	KNOX2 domain	153	202	IPR005541	GO:0003677\|GO:0005634
Trre4g03270	369	SMART	KNOX2_2	148	203	IPR005541	GO:0003677\|GO:0005634
Trre4g03270	369	FunFam	homeobox protein knotted-1-like 3 isoform X1	282	343	-	-
Trre4g03270	369	ProSiteProfiles	'Homeobox' domain profile.	281	344	IPR001356	GO:0003677
Trre4g03270	369	MobiDBLite	consensus disorder prediction	71	88	-	-
Trre4g03270	369	Gene3D	-	287	363	-	-
Trre4g03270	369	MobiDBLite	consensus disorder prediction	61	93	-	-
Trre4g03270	369	Pfam	Homeobox KN domain	301	340	IPR008422	GO:0003677\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre4g03270	Trre-Chr4	38595434	38605275	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre4g03270	89	364	Homeobox Transcription Factor Family	AT5G11060	82.143	5.76e-166	468

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-KNOX	Trre4g03270		KNOX2	2.6e-19	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre4g03270	-		-	gmx:100816347	598.586

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