Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03268 ATGCGACCAACACCGCTGAATGTAGTTGGATCGGAGGAGCCACTTGTTTCGGGGGTGGTTAGGGACAATGGAGCCTCTGGTGCGGTTCCTATTTTTTACCCTGATGGTGGTTTGGCTGGAGTGCGATATGGAAATGTGGCTTCTGGTGCTGCTTCAACTGCATGGTGTATTCGCCCCGGTGTTCCCCATCCCACTTTGAGCCCTACTGTTGGGTTTAATTTTCCCAATCGTGTTGTTGGTGGCAATGCTGTTGATCTTTCAGGTAGTTTTGTTGCAACTGCTAATGGATATCCTTTGAATTTGGGTAATTGGGTTGCCGGTAATGCTTTGGATAACAATAATCTTCGGTACACTAGTGGAAGAATAATTAGCAATGGTAGTGATTGTGCTGGTGGTGTTGGGTTTGTTGGGATTGGTTCCAATCCCCCTGCTAACCAGCAGGTTGATCAGGCGAGTGAAAAAGGTGGGGATGATTCAGTTTCTTCGCGGAAATTGAAGTTCATGTGCAGTTATGGTGGGAAGATTTTGCCTAGGCCTAGTGATGGAATGTTGAGGTATGTTGGTGGGCAGACTAGGATAATAAGTGTTAAGAGAGATGTGAGTTTTAATGATTTAGTGCAAAAGATGGTCAATACTTTTGGGCAACCTGTGATTATCAAATATCAGCTTCCCGGTGAGGATCTTGATGCGTTGGTCTCGGTTTCCTGTGCTGATGATCTGGATAATATGATGGAGGAGTATGAAAGGTTGATTGAGAGGTCTTCAGATTGTTCACCGAAATTAAGGGTCTTTCTGTTTTCTGCTTCAGAGTTTGATCCTTCTGGTCTGCTACAGTTTGTAAATTTACATGATGGTGGACAGAAATATGTTGAAGCTGTGAATGGAATTGCTGAGAGGGTTATTGGCAAGCTCACAAGGAAAGGGAGTCTTACAAGTGCAGCTTCTACTCAAAATTCTGATTTGAGTGGGTTAGAGGCTCATGATAGCACAATTGCTGCTCATGCAGACTTTAATGGCCCACCTATATCCAGCACTTTATCACCTGATACAAATATTGCTGCATCTAATGATTCTGCTACTACAAATGTTATGGTTTCTGAGCCTGTTGAATCAGTATGCTCAGATGTTTCTGCAGTTTCATTGGGTATACCTGTGGCTGATTCAGGTCCAACTCATACTCCACCTTTCCTGAAAGAGAATGAGGTAGAGAAGTATGTACCCGCTACTTTATCCCAGAAGCAGTTTGTGTTGCAGCAGCCTGGAATGCAAATTCCACCCTCTGTGCCTTTGCAGGCATTTGTTGATCCTCAACAGGAAGTTCTGAACCATGCAGAATATGTCCAGATGCCTGCCCATATGGGATTCCCAGATCCTCAGTTTATAGGTAGGCCTGGGACTATCTACTCTCAGCATCACTTTCATGATAACACTGCTCGTTATGCATCCCAACATGCAATCCCTGCAGTGCCCATTACAATGACTCAACCATCTTCCCATGCCGGTATAAGTCCAAGTATTATACATCCACGAACAGTCATGCAAGGGCAACAAAACGGTTTTGAGCAATATTATGATGAAAATACTTCAGGGATAAGGATGCACCACCAAGTTATTTCTGAGCAAAGTTACAATGCATATCCTATTCAAGTCCCTTTCGGAGGTAATTATGGCTGGGTTCAGGTTTCTCCTTCAGAGCATGTTATTTTTCATGACGAATTGTTACCTCAGCAACCAGCAATGGTCCCTCAAAGAGTGGAGGATTGTTATATGTGTCAGAAAAAGCTGCCTCATGCACATTCAGATCCAGTGGTTCAGGATCAGCATAATAGCTGTGCAGGTTTAATTCCTGATTCAATGCCAAGTTATAATAGTCTTCCGGTAGAGGACAGTTTAAGAGCTCAACAAACAAATAGGGTTTTGGTGACTACACCAGTGAAGGAAGGCAATGTTAGTTTTGAACAAGAAGTTGGGACTAGACTCAGGGTCAAGATACCATGTAGTGACACAAGTGGTCTTCCTCTGGAGGCTGAAAGTGAGAGAAATAGGTCTGATCATCCCAGAAATGCAGTGGTTATCCCGGACATAGTTGGAAGAACAGGTGACAAACAGTCGCCAAGTGATGGGCTGACTGGGACAGCACCATTGTCTTATCTAGATGATTCCACTCGCCAGAACATGGTGCCAGATGAAAACTGGGCCGAAGAAGATGTAGTTGTGAATAAGCCTGTTAATGAAATACCTTTAGTTTGTGGCAAATCTGTTGAAACTTCTGAATGTGTGGTTCAAGTATCATCAACAGAATATACAAACGAACTTGCTAGTACAATTTCAAAAGTAGATGCTGTGGAGAATTGGATTGCACATGACCTGCAAAAACCTATTGATGGAAGAACTGACAACATCAAGATAAGCAATCCTGAAAATATTGATTACAATACTCAGCTTGCTATAGAGAAGAAATGGATGGTTTCAGATAACAACCTTTGCAGGTCAAAATTGAGTGCTGATGCCAATCAAATTAAGACGGTGGATGCTCTTCCCAATTCCACTGTAGAAATTTCATACAGTAATAATTCTAGGCCAGGGGAGTACAATGAGGTTGGACACCCGCCTATTTGGGGCATTCCTGGAGCAAATCCTCAATCAAAGAATGGAATCCATCAGAAGGATGATGATGCAGTTTTATCTTCAGTTTCGCAACCTACTGGGTTTGAACATATGCATGATTCTTCAAACTCACTTTTTAGCAATCAGGATCCCTGGAATTTACGTGGTACTTACTTTCCACCCCCTAGACCTGACAAAGTCACATCAAAGAAAGAAACCTATTCCTATATGCATCAGTTTGGTGAGAATTCAGGCAACGTCGGGGAACAAAATCTTGATGTTCAATTGGATGATGGTCTCTATCAGACATTTAAACAGAATTTAACATCAGAAGAAGCTCAATATGCCAAGGGATCACCAGAAGACCAACAACTTCAAGCTGTTGCTGAAAGTTCAGCCGCATCTGTTCTGCACTCAAGCACTTCAAATCCTGACTTACATGCCCGAGATGTGTCCCATCATGAAGACATTGAAGATGGAGATGTTAAAAATAATCAACTAGATATACAGTGTAAAGAAAAAACTCAGGATGACAAAAGCAAGCTTTCTGAGAAGGCAAATTTTGGCTTTCCAGCATCAGATGTTGGAGCGTTACAGATTATAAGGAATAGTGACCTTGAAGAGCTTGTAGAATTGGGCTCTGGGACCTTTGGGACTGTGTATCATGGAAAATGGAGAGGTACTGATGTTGCAATAAAGCGGATTAATGATAGGTGTTTTGCTGGAAAGCCTTCGGAGCAAGAGCGCTTGAGAGCTGATTTTTGGAATGAGGCAATCAAGCTTGCTGACTTGCACCACCCAAATGTGGTAGCTTTCTATGGTGTTGTTCTTGATGGCCCAGGAGGTTCTGTGGCAACAGTAACAGAGTATATGGCTAATGGTTCTCTAAGAAATGCCTTCCAGAAGAATGGGAGGAATGTTGACAAGCGCAAGCGTCTTATGATTGCAATGGATGTGGCCTTTGGTATGGAGTACCTCCATGGAAAAAACATAGTACACTTTGACTTAAAAAGTGACAACTTGCTTGTGAATCTTCGTGATCCACACCGCCCAATATGCAAGGTTGGGGACTTGGGTTTGTCCAAAGTAAAGTGCCAGACTCTAATATCTGGTGGTGTGAGAGGAACCCTACCTTGGATGGCACCTGAACTCCTGAATGGGAGCAGTAGCCTTGTTTCAGAAAAGGTTGATGTTTTCTCATTTGGTATTGTCATGTGGGAACTCCTCACTGGAGAAGAGCCATATGCTGATTTGCACTATGGGGCCATCATAGGTGGCATTGTGAACAACACTTTGCGGCCTCTGGTTCCAGAATCTTGTGATCCAGAATGGAGAGTACTGATGGAGAGGTGCTGGTCATCAGAACCATCAGAAAGACCTTCATTTACCGAGATTGCCAATGATTTACGTTCCATGGCAGCCAAGATCTCTCCCAAAGGATAA 4050 0.4311 MRPTPLNVVGSEEPLVSGVVRDNGASGAVPIFYPDGGLAGVRYGNVASGAASTAWCIRPGVPHPTLSPTVGFNFPNRVVGGNAVDLSGSFVATANGYPLNLGNWVAGNALDNNNLRYTSGRIISNGSDCAGGVGFVGIGSNPPANQQVDQASEKGGDDSVSSRKLKFMCSYGGKILPRPSDGMLRYVGGQTRIISVKRDVSFNDLVQKMVNTFGQPVIIKYQLPGEDLDALVSVSCADDLDNMMEEYERLIERSSDCSPKLRVFLFSASEFDPSGLLQFVNLHDGGQKYVEAVNGIAERVIGKLTRKGSLTSAASTQNSDLSGLEAHDSTIAAHADFNGPPISSTLSPDTNIAASNDSATTNVMVSEPVESVCSDVSAVSLGIPVADSGPTHTPPFLKENEVEKYVPATLSQKQFVLQQPGMQIPPSVPLQAFVDPQQEVLNHAEYVQMPAHMGFPDPQFIGRPGTIYSQHHFHDNTARYASQHAIPAVPITMTQPSSHAGISPSIIHPRTVMQGQQNGFEQYYDENTSGIRMHHQVISEQSYNAYPIQVPFGGNYGWVQVSPSEHVIFHDELLPQQPAMVPQRVEDCYMCQKKLPHAHSDPVVQDQHNSCAGLIPDSMPSYNSLPVEDSLRAQQTNRVLVTTPVKEGNVSFEQEVGTRLRVKIPCSDTSGLPLEAESERNRSDHPRNAVVIPDIVGRTGDKQSPSDGLTGTAPLSYLDDSTRQNMVPDENWAEEDVVVNKPVNEIPLVCGKSVETSECVVQVSSTEYTNELASTISKVDAVENWIAHDLQKPIDGRTDNIKISNPENIDYNTQLAIEKKWMVSDNNLCRSKLSADANQIKTVDALPNSTVEISYSNNSRPGEYNEVGHPPIWGIPGANPQSKNGIHQKDDDAVLSSVSQPTGFEHMHDSSNSLFSNQDPWNLRGTYFPPPRPDKVTSKKETYSYMHQFGENSGNVGEQNLDVQLDDGLYQTFKQNLTSEEAQYAKGSPEDQQLQAVAESSAASVLHSSTSNPDLHARDVSHHEDIEDGDVKNNQLDIQCKEKTQDDKSKLSEKANFGFPASDVGALQIIRNSDLEELVELGSGTFGTVYHGKWRGTDVAIKRINDRCFAGKPSEQERLRADFWNEAIKLADLHHPNVVAFYGVVLDGPGGSVATVTEYMANGSLRNAFQKNGRNVDKRKRLMIAMDVAFGMEYLHGKNIVHFDLKSDNLLVNLRDPHRPICKVGDLGLSKVKCQTLISGGVRGTLPWMAPELLNGSSSLVSEKVDVFSFGIVMWELLTGEEPYADLHYGAIIGGIVNNTLRPLVPESCDPEWRVLMERCWSSEPSERPSFTEIANDLRSMAAKISPKG 1349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03268 1349 CDD STKc_MAP3K-like 1081 1338 - -
Trre4g03268 1349 SMART PB1_new 179 268 IPR000270 GO:0005515
Trre4g03268 1349 MobiDBLite consensus disorder prediction 703 722 - -
Trre4g03268 1349 Pfam Protein tyrosine and serine/threonine kinase 1079 1338 IPR001245 GO:0004672|GO:0006468
Trre4g03268 1349 Gene3D Phosphorylase Kinase; domain 1 1068 1161 - -
Trre4g03268 1349 MobiDBLite consensus disorder prediction 667 722 - -
Trre4g03268 1349 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1163 1349 - -
Trre4g03268 1349 SMART serkin_6 1075 1344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g03268 1349 Gene3D - 185 268 - -
Trre4g03268 1349 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1068 1162 - -
Trre4g03268 1349 PANTHER SERINE-THREONINE PROTEIN KINASE 213 1340 - -
Trre4g03268 1349 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1200 1212 IPR008271 GO:0004672|GO:0006468
Trre4g03268 1349 SUPERFAMILY Protein kinase-like (PK-like) 1068 1338 IPR011009 -
Trre4g03268 1349 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 184 268 - -
Trre4g03268 1349 SUPERFAMILY CAD & PB1 domains 180 271 - -
Trre4g03268 1349 ProSitePatterns Protein kinases ATP-binding region signature. 1081 1112 IPR017441 GO:0005524
Trre4g03268 1349 CDD PB1_UP2 168 266 - -
Trre4g03268 1349 ProSiteProfiles Protein kinase domain profile. 1075 1342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g03268 1349 Gene3D Transferase(Phosphotransferase) domain 1 1162 1348 - -
Trre4g03268 1349 PRINTS Tyrosine kinase catalytic domain signature 1265 1287 IPR001245 GO:0004672|GO:0006468
Trre4g03268 1349 PRINTS Tyrosine kinase catalytic domain signature 1194 1212 IPR001245 GO:0004672|GO:0006468
Trre4g03268 1349 PRINTS Tyrosine kinase catalytic domain signature 1157 1170 IPR001245 GO:0004672|GO:0006468
Trre4g03268 1349 PRINTS Tyrosine kinase catalytic domain signature 1309 1331 IPR001245 GO:0004672|GO:0006468
Trre4g03268 1349 Pfam PB1 domain 184 266 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03268 Trre-Chr4 38583219 38591677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03268 164 638 MAP Kinase Kinase Kinase AT3G46920 38.683 8.43e-80 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Trre4g03268 PK_Tyr_Ser-Thr 1.6e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03268 - - gmx:100776264 1830.45