Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03267 ATGGCAGGAATGCTTCCAGGAGTTGAATCTGCTAGAAGAAGACATGTCCACAAAGGAGTTGGATTTTCTGATTCACCATCTTTGACTTCTCATAACACCTCAAGACGCTCTGGTTTCTGTTTGTATGCAAGTAACCATGAATCTCGTCCTTCCTCTTTCTCTTCCTCTTCAATGCAAAGAAACATATTTTACCACACACACCAAGATGAAAATATGGTTGGAGCAGCTAGAGAAGCTAAACAGAGATTAGATGACAAATTCAGATCACAAAGGGTATCAGAAAACATAAGGCAAAGGAACATGAAGTGTGTAGAGGGTAGAAAGGAAAGCATAGAAGAGTTACAAATTGAGGTATATGGGTCAAAGAAAAGTGGTCCAAGGAAGTTCAGTTGGAGCAAATTGAGCTGGAAGGCATCAGAACAAGATGATTGTGCTGTGTGTTTGGAATCATTCAAGACTGGTGAGAAATTGATTCCTCTCCCTTGTGCACACAAATTCCATTCCACATGCTTGAAACCTTGGTTAGAAAATAATTCACACTGTCCATGTTGTAGAACTACCATTCTTTCCCTCTAG 576 0.401 MAGMLPGVESARRRHVHKGVGFSDSPSLTSHNTSRRSGFCLYASNHESRPSSFSSSSMQRNIFYHTHQDENMVGAAREAKQRLDDKFRSQRVSENIRQRNMKCVEGRKESIEELQIEVYGSKKSGPRKFSWSKLSWKASEQDDCAVCLESFKTGEKLIPLPCAHKFHSTCLKPWLENNSHCPCCRTTILSL 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03267 191 Pfam Ring finger domain 142 185 IPR001841 -
Trre4g03267 191 SUPERFAMILY RING/U-box 133 189 - -
Trre4g03267 191 SMART ring_2 144 184 IPR001841 -
Trre4g03267 191 MobiDBLite consensus disorder prediction 1 34 - -
Trre4g03267 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 190 IPR013083 -
Trre4g03267 191 PANTHER SI:CH211-59O9.10 23 189 - -
Trre4g03267 191 ProSiteProfiles Zinc finger RING-type profile. 144 185 IPR001841 -
Trre4g03267 191 FunFam Zinc finger family protein 118 190 - -
Trre4g03267 191 CDD RING-H2_PA-TM-RING 143 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03267 Trre-Chr4 38526999 38528434 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03267 1 88 C3H Transcription Factor Family AT2G15580 46.535 7.55e-17 71.2