Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03244 ATGGGGAGGAAAAAGAAGCAAGTAGGAGAAACAAGTGAAGAAAATGGGAATCATATTAAGGTCGAGGATAAAACGTCGAATCCGTATGATAATGATACTATGATATTTATATGTAAGGCTCAAGAGTTGAAGGAAGAAGGAAACAGGATGTTCCAAAAGAGGGATCTTCAAGGAGCTATGGTGAAGTATGAGAAAGCACTCAAATTGCTTCCGACAAATCATATTGATGTGTCGTATGTGCGGAGTAACATGGCTGCATGCTATATGCAGATGGGAGTTGGTGAGTACCCTAGGGCGATTAATGAATGTAATTTGGCTCTTGAAGTTACTCCAAAATACAGTATAGCTTTGTTGAAGAGAGCGAGGTGCTACGAGGCTTTGAATAGACTGGATTTAGCATTGAGAGATGTTAGTACTGTTTTGAGTATGGAGCCGAATAATATCATGGCATTGGAGATCTCGGGTAAGGTGAAAAGTGCACTTGAAGATAGAGGGTTAAGAGTGAATGATGCGCAAATTGAGTTGCCTCCAGATTATGTCGAGCCTCCTTTTGCTGTGCCTTCCGAAAAGGTAGCGAAAGAAAAGAAACACAAGAAGAAGAGCAAAAAAGAGAAGGTCAAGGCTACTGATGAAATTGTATTGAAACAAGCTGAGGAGAAACTTGAAGAGAAGAAAGACGAGGACACTATTGAAGCAATTGAGGCGGAGGACTGTCTCAAAGATAAAAAAAGGGCTAATAAATCTAAAAAGAAGGCGGCCAAGGGAAAAAAAGATAAACAGAAAGATGATGTTAAGGAGGTCAATGATGAAAAATGTAACATTAGAAGTGAAGATGTACCTAAGAAAACAGCAAAACTTGTTTTCGGCGATGATATAAGATGGGCTCAATTGCCGGTTAATTGCAGCCTCTTTCAGCTAAGAGAAGTTATTTGTGACCGGTTCCCAAGTTTAGGAGCAGTTCTTGTCAAATATAGAGATCAAGAAGGTGATTTGATCACAATCACCTGTGATGAAGAATTGAAGTGGGCAGAAACAGGATCACAGGGTTCTATCCGACTGTATATAGTAGAAGCTAATCCTAACCACGACCCATTCTATGAGAAACTTCATGTGAAGGATGTTGAAATTGATAATGCTACTATGAATGGCTGCGTGGTGAAATCAAAGGAAATTATGATCTCATCTTGTGTTGAGGATTGGGTAATTCAGTTTGCACAATTGTTCAAGAACCATGTTGGATTTGAATCTGACAGATACTTAGATTTTCATGAACTTGGGATGAAGCTCTATTCAGAAGCTGTGGAAGAGACTGTTACAAGCGAAGATGCGCAAGGCCTTTTTGACATGGCAGGAGGTAAATTCCAAGAGATGACAGCTCTAGCATTGTTCAATTGGGGAAATGTGCATATGTCCAGAGCAAGGAAGAAAGTCTATTTAACCGATAATTCTTCTAAAGAGCATATGTATGAACAAATAAAAAGTTCATATGAATGGGCGCAGAAAGAATATGTAAAAGCTGGAGAAAAATTTGAAGCAGCCATTAAAATTAAGTCAGATTTTTATGAAGGCTTCCTTGCTCTAGGTCAGCAGAGGTTTGAACAAGCGAAACTTTGTTGGTATTACGCACTAAGTAGTAATATAGACTTAGCAACATGGCCCTCCACAGAGGTTATTCATCTTTACAACAGTGCTGAGGAGAATATGGAGAAAGGAATGCTGATATGGGAAGAATCGCAAGAGCAACAGCTTAGTGAAACCTCCAATATTGGATTGGACAGGGTATTTAAAAATATGTCATCAGATGAAACTGCTGCACAGGTAGCAAACATGAGGTCTCAGATAAATCTCTTGTGGGGTACCATGCTATACGAACGCTCGATTTTGGAATTCAAATTAGGGCTACCTGTATGGCATGAGTCTTTGGAAGTTGCAATTGAGAAGTTTGAACATGCAGGAGCTTCTCCAACAGATACAGCTGTAATGTTGAAAAACCACTGTTCAAATAACACTGCTGTAGATGGTCTAGGTTTCAAAATTGATGAAATAGTACAGGCATGGAATGAGATGTATGAAGCTAAAAAGTTGCAGAAAGGAGTTCCATCCTTTCGCTTAGAACCCTTGTTCAGAAGAAGAGTATCAAAAATATACCACGCCTTTGAGCTTGTATGA 2169 0.3933 MGRKKKQVGETSEENGNHIKVEDKTSNPYDNDTMIFICKAQELKEEGNRMFQKRDLQGAMVKYEKALKLLPTNHIDVSYVRSNMAACYMQMGVGEYPRAINECNLALEVTPKYSIALLKRARCYEALNRLDLALRDVSTVLSMEPNNIMALEISGKVKSALEDRGLRVNDAQIELPPDYVEPPFAVPSEKVAKEKKHKKKSKKEKVKATDEIVLKQAEEKLEEKKDEDTIEAIEAEDCLKDKKRANKSKKKAAKGKKDKQKDDVKEVNDEKCNIRSEDVPKKTAKLVFGDDIRWAQLPVNCSLFQLREVICDRFPSLGAVLVKYRDQEGDLITITCDEELKWAETGSQGSIRLYIVEANPNHDPFYEKLHVKDVEIDNATMNGCVVKSKEIMISSCVEDWVIQFAQLFKNHVGFESDRYLDFHELGMKLYSEAVEETVTSEDAQGLFDMAGGKFQEMTALALFNWGNVHMSRARKKVYLTDNSSKEHMYEQIKSSYEWAQKEYVKAGEKFEAAIKIKSDFYEGFLALGQQRFEQAKLCWYYALSSNIDLATWPSTEVIHLYNSAEENMEKGMLIWEESQEQQLSETSNIGLDRVFKNMSSDETAAQVANMRSQINLLWGTMLYERSILEFKLGLPVWHESLEVAIEKFEHAGASPTDTAVMLKNHCSNNTAVDGLGFKIDEIVQAWNEMYEAKKLQKGVPSFRLEPLFRRRVSKIYHAFELV 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03244 722 Coils Coil 250 270 - -
Trre4g03244 722 MobiDBLite consensus disorder prediction 244 269 - -
Trre4g03244 722 Pfam PB1 domain 283 356 IPR000270 GO:0005515
Trre4g03244 722 SMART tpr_5 114 147 IPR019734 GO:0005515
Trre4g03244 722 SMART tpr_5 78 113 IPR019734 GO:0005515
Trre4g03244 722 SMART tpr_5 40 73 IPR019734 GO:0005515
Trre4g03244 722 Coils Coil 207 227 - -
Trre4g03244 722 CDD PB1 289 355 - -
Trre4g03244 722 MobiDBLite consensus disorder prediction 184 207 - -
Trre4g03244 722 MobiDBLite consensus disorder prediction 1 26 - -
Trre4g03244 722 ProSiteProfiles TPR repeat profile. 114 147 IPR019734 GO:0005515
Trre4g03244 722 ProSiteProfiles TPR repeat profile. 40 73 IPR019734 GO:0005515
Trre4g03244 722 SMART PB1_new 281 358 IPR000270 GO:0005515
Trre4g03244 722 Gene3D - 264 358 - -
Trre4g03244 722 ProSiteProfiles PB1 domain profile. 281 358 IPR000270 GO:0005515
Trre4g03244 722 SUPERFAMILY TPR-like 40 163 IPR011990 GO:0005515
Trre4g03244 722 SUPERFAMILY CAD & PB1 domains 282 367 - -
Trre4g03244 722 Gene3D Tetratricopeptide repeat domain 38 164 IPR011990 GO:0005515
Trre4g03244 722 PANTHER PROTEIN CLMP1 3 720 IPR044517 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03244 Trre-Chr4 38028692 38030941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03244 23 147 Calmodulin-binding Proteins AT3G25230 32.374 3.45e-08 55.1