LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre4g03225	ATGACGTCACGTTCGTCGCACGGCGGCAGCAGCCACGGCGGACAGCGGCCTAGAGCAGGGAAGTATGAGCTGGGCAGGACGCTTGGTGAAGGAAATTTTGCAAAGGTCAAGTTTGCCAGACATGTTGAAACTGGTGAACATGTAGCTATCAAAATTCTTGACAAGGAAAAAATTCTCAAGCACAAAATGATTCGTCAGATAAAGCAAGAAATATCAACAATGAAATTGATTAGACACCCAAATGTCATACGCATGCATGAGGTAATAGCGAACAGGTCAAAGATATTCATTGTAATGGAAATTGTGACTGGCGGGGAGCTGTTTGATAAAATTGCACGCAACGGGAGGTTGAAAGAAGATGAAGCAAGAAAATACTTTCAGCAGCTTATATGTGCTGTGGACTATTGTCATAGTAGAGGCGTTTGCCACAGAGACCTAAAGCCTGAGAATTTGTTGCTGGATGCTAACGGAGTGCTTAAAGTATCGGATTTTGGATTGAGTGCATTGCCTCAACAAGTTCGGGAAGATGGGCTACTTCACACAACATGCGGTACTCCAAATTATGTTGCTCCAGAGGTGATCCAAAACAAAGGGTATGATGGTGCAATTGCAGATCTTTGGTCATGTGGTGTTATTCTTTTCGTTTTAATGGCCGGCTATTTGCCCTTTGAAGAAGACAATCTTGTGGCTTTATATAAAAAGATTTTCAAGGCTGAGTTTACGTGTCCTCCCTGGTTCTCTTCAAGTGCAAAGAAACTAATCAAAAGAATCCTTGATCCCAGTCCTGTCACAAGGATTAAAATTGCTGATGTCATTGAAAATGAGTGGTTCAAGAAGGGATATACGCCTCCCGTGTTTGAACAGGCTGATGTTAGTCTTGATGATGTAAACTCTATTTTCAACGGTTCTATGGATTCGGATAGTATTGTTTTTGAGAGGCATGAAGAAGGGCCTGTTGCACCTGTGACCATGAATGCGTTTGAACTTATCTCTAAATCTCAGGGCCTCAACCTTGGTAGCCTTTTTGAGAAGCAAATGGGACTTGTAAAAAGGGAAACAAGATTCACATCTAAATGTTCGGCGAATGAGATAATTTCAAAAATTGAGGAAACTGCTGGACCTATGGGTTTTGATGTAAAGAAGAACAACTGCAAGTTAAGGCTTCATGGGGAAAAATCTGGAAGGAAAGGTCATCTATCTGTAGCCACGGAGATCTTGGAGGTGGCCCCTTCACTTTACATGGTTGAGATGCGAAAATCTGAAGGAGATACTCTGGAATTTCACAAGTTTTACAAAAATATATCGACTGGGCTGAAAGATATTGTTTGGAAAGCAGATCCTATTGCTGAAGGAAGTGATGATGGTTAG	1368	0.4181	MTSRSSHGGSSHGGQRPRAGKYELGRTLGEGNFAKVKFARHVETGEHVAIKILDKEKILKHKMIRQIKQEISTMKLIRHPNVIRMHEVIANRSKIFIVMEIVTGGELFDKIARNGRLKEDEARKYFQQLICAVDYCHSRGVCHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVIQNKGYDGAIADLWSCGVILFVLMAGYLPFEEDNLVALYKKIFKAEFTCPPWFSSSAKKLIKRILDPSPVTRIKIADVIENEWFKKGYTPPVFEQADVSLDDVNSIFNGSMDSDSIVFERHEEGPVAPVTMNAFELISKSQGLNLGSLFEKQMGLVKRETRFTSKCSANEIISKIEETAGPMGFDVKKNNCKLRLHGEKSGRKGHLSVATEILEVAPSLYMVEMRKSEGDTLEFHKFYKNISTGLKDIVWKADPIAEGSDDG	455

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre4g03225	455	Gene3D	Transferase(Phosphotransferase) domain 1	102	283	-	-
	Trre4g03225	455	SMART	serkin_6	22	277	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre4g03225	455	FunFam	Non-specific serine/threonine protein kinase	318	444	-	-
	Trre4g03225	455	Pfam	NAF domain	321	381	IPR004041	GO:0007165
	Trre4g03225	455	ProSitePatterns	Protein kinases ATP-binding region signature.	28	51	IPR017441	GO:0005524
	Trre4g03225	455	MobiDBLite	consensus disorder prediction	1	21	-	-
	Trre4g03225	455	ProSiteProfiles	NAF domain profile.	319	343	IPR018451	GO:0007165
	Trre4g03225	455	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	141	153	IPR008271	GO:0004672\|GO:0006468
	Trre4g03225	455	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	19	433	-	-
	Trre4g03225	455	Pfam	Protein kinase domain	22	277	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre4g03225	455	CDD	STKc_SnRK3	21	276	-	-
	Trre4g03225	455	FunFam	Non-specific serine/threonine protein kinase	15	317	-	-
	Trre4g03225	455	SUPERFAMILY	Protein kinase-like (PK-like)	19	298	IPR011009	-
	Trre4g03225	455	CDD	CIPK_C	325	440	-	-
	Trre4g03225	455	Gene3D	Kinase associated domain 1, KA1	319	444	-	-
	Trre4g03225	455	FunFam	Non-specific serine/threonine protein kinase	14	101	-	-
	Trre4g03225	455	Gene3D	Phosphorylase Kinase; domain 1	12	101	-	-
	Trre4g03225	455	ProSiteProfiles	Protein kinase domain profile.	22	277	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre4g03225	Trre-Chr4	37574673	37584557	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre4g03225	14	450	CBL-interacting serine-threonine protein kinases	AT1G01140	67.494	0.0	637

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Trre4g03225		Pkinase	6.8e-72	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre4g03225	-		-	gmx:100788746	778.474