Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03210 ATGTTAGTTTTGTTACTATCAGCTAGCTATCTGCTTTATGATTTCCAATTCCGCTTCAAACACTTGCTCGGGGATTCTGGTCATGAAGGGTCAGAAGCTGATAAGGTAACTTTGCCTGATCAGCCTGATGTGATGTTTAACCAGTTTGCTGGTTACATCACGGTTGATGTAATTCAAAAAAGAAAATTGTTTTACTACTTTGTTGAAGCCGTCAAGGAACCAGCATCGAAACCGGTTATTCTTTGGTTGAATGGAGGGCCTGGTTGCTCCTCCGTTGGCCAGGGTGCTTTTACAGAGCACGGCCCATTCAAACCTACTACAGAGGGTCTTGTGGAGAACCATTACAGCTGGAATAGAGAGGCCAACGTCCTCTACCTAGACTCACCAGCTGGTGTTGGCTTCTCCTATTCGGCCAACACATCTTTTTATTTTTTCGTGAACGATGAAATTGCAGCAAGGGACCATCTCTTATTTCTCAAGGGTTGGTACTCCAAATTCCCACAGTACCAATCCAATGATTTCTTCATCACTGGAGAGAGCTATGGAGGGCACTATGCTCCCCAGCTTGCCCAGCTTATTCTTCAATCCAAAACCAACATCAGTCTAAAGGGGATTTTGATAGGGAATCCTCTTTTGGATTTCGACATAGACTTTAATTCCCGAGCGGAATTTTTATGGTCTCATGGTCTGATTGCGGATTCCACCTACCAGAGGTTCACCAAGGTTTGCAACTACTCTAGGATCCGGAGGGAGGCACGGCGTGGTAATACCAGTGTAATCTGTGATGAGGTGTATCAAGAAGTGACAACAGCGACTAGCAAATACATTGATACCTTCGATGTAACGCTGGATGCATGTCAACAATCCGAGCAGGCACGCAGGCTGACTATTTCGCATACTGGAGAAAAGATCGATGTATGTCAGGAGGACCGAGTGTCCAAGTACTTGAACAGGAAGGACGTCCAGCAAGCTCTTCATGCAAATCTTGTAGGCGTCGACGATTGGTCAACCTGTAGTGGAGTCTTGGTATATAACTTTTCAAATCTAGAGAATCCCACCACATCTTTGCTAGGAACACTTGTTAAGGCAGGTGTAAGGGTTCTAGCATATAGTGGTGATCAAGATTCAGTTATACCATTGACCGGGACGAGAACTTTACTTAATGGATTGGCAAAAGATCTAGCGCTCAATACAACTGAGGTGTATAGAGTTTGGCTTGAGGGTGGACAGGTGGGTGGATGGACAGAGGTGTATGGGGAGGGTTTACTTGCATTTGCAACAGTGAGAGGAGGAGGTCACGCTGTTCCATTTACTCAGCCCGAGCGAGCATTGGTACTGCTGAAATCTTTTTTGGAAGGAAAGTCACTTCCAATTATTTGA 1380 0.4514 MLVLLLSASYLLYDFQFRFKHLLGDSGHEGSEADKVTLPDQPDVMFNQFAGYITVDVIQKRKLFYYFVEAVKEPASKPVILWLNGGPGCSSVGQGAFTEHGPFKPTTEGLVENHYSWNREANVLYLDSPAGVGFSYSANTSFYFFVNDEIAARDHLLFLKGWYSKFPQYQSNDFFITGESYGGHYAPQLAQLILQSKTNISLKGILIGNPLLDFDIDFNSRAEFLWSHGLIADSTYQRFTKVCNYSRIRREARRGNTSVICDEVYQEVTTATSKYIDTFDVTLDACQQSEQARRLTISHTGEKIDVCQEDRVSKYLNRKDVQQALHANLVGVDDWSTCSGVLVYNFSNLENPTTSLLGTLVKAGVRVLAYSGDQDSVIPLTGTRTLLNGLAKDLALNTTEVYRVWLEGGQVGGWTEVYGEGLLAFATVRGGGHAVPFTQPERALVLLKSFLEGKSLPII 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03210 459 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 136 IPR001563 GO:0004185|GO:0006508
Trre4g03210 459 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 125 IPR001563 GO:0004185|GO:0006508
Trre4g03210 459 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 187 IPR001563 GO:0004185|GO:0006508
Trre4g03210 459 PRINTS Carboxypeptidase C serine protease (S10) family signature 423 436 IPR001563 GO:0004185|GO:0006508
Trre4g03210 459 SUPERFAMILY alpha/beta-Hydrolases 43 456 IPR029058 -
Trre4g03210 459 FunFam Carboxypeptidase 29 457 - -
Trre4g03210 459 Pfam Serine carboxypeptidase 42 453 IPR001563 GO:0004185|GO:0006508
Trre4g03210 459 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 37 440 IPR001563 GO:0004185|GO:0006508
Trre4g03210 459 FunFam Carboxypeptidase 354 453 - -
Trre4g03210 459 Gene3D alpha/beta hydrolase 29 457 IPR029058 -
Trre4g03210 459 ProSitePatterns Serine carboxypeptidases, serine active site. 176 183 IPR018202 GO:0004185
Trre4g03210 459 ProSitePatterns Serine carboxypeptidases, histidine active site. 423 440 IPR033124 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03210 Trre-Chr4 37316823 37321828 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03210 312 456 Calmodulin-binding Proteins AT2G22960 23.973 4.32e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03210 K16297 - gmx:100805028 604.364