LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre4g03206	ATGAAGCAGTCTTTTGATCCATCATTTTCTGGTCCTTCCAAGATTCCACCAATAAGTATATCTGGAACGTCAGGTTATGGCGCATTGGAAGTTTTATCTGGATCTGATTCATTTCATACTTCGGCTGATGCTAGTCTCTTTTCCAGCTCATTACCTGTTCTTCCACACGAAAAATTGAACTTAAATGAAATTGAAAATGGTTTTCAATCCGTTGATGATATCTCAACTAGCTTTAAAAAGCTTCATCAAGAGGAAGACCTCAATGATTCCCTTGAAGATAGTAATAATCATGCAATCGGAACCATGCTTCCTGACGACGACGATGAGCTTTTGGCTGGAATAATGGATGATTTTGACCTAAGCGGTTTACCTGGTTCCCTTGAGGACTTGGAAGAGTATGATATTTTTGGTAGTGGTGGTGGTTTGGAACTAGAAACCGATGCACAAGAAAATCCCAGTGTGGGAATATCTAAGTTAAGCTTCTCTGATAGCTCTGTTAGCAATGGTTTGCCCCCTTATTCTGTACCTAATGGCTTGGGAGGTGGAGCCGTTGCCGGAGAACATCCATATGGAGAGCATCCTTCTCGAACATTGTTTGTTCGAAATATTAACAGTAATGTGGAGGATACAGAGCTGCGGATTCTTTTTGAGCAATATGGTGATATTAGAACCCTATATACTGCGTGTAAACACAGGGGGTTTGTAATGATATCGTATTATGACATCCGTGCTGCTCGAACAGCCATGCGGGCATTACAAAACAAACCATTGCGGCGAAGGAAACTTGATATTCACTTTTCAATACCAAAGGATAATCCATCAGACAAGGATATCAATCAAGGAACCTTGGTAGTTTTCAATTTGGACCCATCTGTTTCAAATGAAGACCTCCGCCAAATATTTGGGGCTTACGGAGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCATAAGTTTATTGAATATTATGATGTAAGAGCTGCAGAAGCAGCACTTAAATCATTAAATAGGTGTGACATTGCTGGTAAACGCATAAAGCTTGAACCAAGTCGGCCTGGAGGAGCTCGTCGCAATTTGATGCTCCAACTGAATCAAGAGCTTGACCAAGACGAGTGTCGAAGTTTTCGATATCAAGTGGGTTCACCTCTAGCCAACTCTCCGCCAGGTAATTGGTTACAGTTCAGCAGCCCTGTCGAGCAGAGTTCATTGCCAACTGTCAATCATTCTCCTGGTTCTAGTATCATGAGCCCAACAACCCGATCTAATTTACATGGATTAGCTTCAATTTTGCAACCACAGGTATCTAACACATCGAAGGCCACAACTCTTGGCAAAGATATAGGAAGGAGTAGTTATGGAGACCACATATTTTCCAATACGAGTTCATCCTCTGGATCTACTTTCAACTCACATTCACTTCCAGAGCCAAAATTTAGTCAATATCGTGGAACTTTATCCTCGTTTGGTGCATCAACATCAAATAGCTCTTCAGTAGAGACCTTGACCGCTCCACAGTTTCTATGGGGAAGTCCAAACGTATCCTCAGCGCAAACCAAACCTTCGGTTTGGCAAAGACCATCCGTGGGACATCAACTTAGTACATTGAATGGAACGAATCATCCTTTCCCATACACAAGTCAGAGCAATTCCTTTGTCAGTTCATCCCAGCAACATCACCATCATCACGTTGGTTCTGCTCCATCAGGTTTGGCTTTTGAGAGGCACTTCGGTTTTTTCCCCAAGTCATCTGAAACTTCATTGATGAATAATGTTAGCTATACTGGCATGAGTCTTGGGCACAATGATGGAAAATACTTGCTTAATGCTGCCATTTCTGGTAATGCCGGCGTTTCTATTCCAAGAAGTATGGCTGATAATGGTTCATCAAACTTCAGAATGAGATCTTCTCCTATACTTAGTCCCGTGTTTTTGGGTAATGGTCCTTATCCAGGAGTTTTGCCGACTGCTATGGAGAGTTTATCTGACCGTGCTAAGAGTAGATGGATCGATAACAATGGTAGCCAAGTTGACAGCAAGAAGCTATTTCAGCTCGACTTGGATAAGATCAAAAGTGGTGAAGATACAAGGACTACATTGATGATAAAGAATATCCCAAATAAATACACCTCAAAAATGTTGTTGGCTGCTATTGATGAATATCACAAGGGAACCTATGATTTTCTCTATCTGCCAATTGACTTTAAGAATAAATGCAATGTCGGTTATGCATTTATCAACATGCTGTCACCCTCACATATTATTCCATTCTTCGAGACATTCAATGGGAAGAAGTGGGAGAAGTTTAATAGTGAAAAAGTTGCTTCTTTGGCTTATGCTCGAATCCAAGGGAAGAATGCCCTTGTGAACCATTTCCAAAATTCAAGTTTGATGAATGAAGATAAGCGCTGCCGACCTATTGTCTTCCACTCAGATGGTTCTGAAGCTGGTGATCAGGCTATACATGAGCATCTCCCCTCCAACTACAACAATATTCAGGCAGTTAAGTCAAGCGAGTTACAATTAAGCGATTCACTCGGATTCCCTACAAAGGACGGTTTTCATGTGAATTTGAATGCAAATTAA	2589	0.4137	MKQSFDPSFSGPSKIPPISISGTSGYGALEVLSGSDSFHTSADASLFSSSLPVLPHEKLNLNEIENGFQSVDDISTSFKKLHQEEDLNDSLEDSNNHAIGTMLPDDDDELLAGIMDDFDLSGLPGSLEDLEEYDIFGSGGGLELETDAQENPSVGISKLSFSDSSVSNGLPPYSVPNGLGGGAVAGEHPYGEHPSRTLFVRNINSNVEDTELRILFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEYYDVRAAEAALKSLNRCDIAGKRIKLEPSRPGGARRNLMLQLNQELDQDECRSFRYQVGSPLANSPPGNWLQFSSPVEQSSLPTVNHSPGSSIMSPTTRSNLHGLASILQPQVSNTSKATTLGKDIGRSSYGDHIFSNTSSSSGSTFNSHSLPEPKFSQYRGTLSSFGASTSNSSSVETLTAPQFLWGSPNVSSAQTKPSVWQRPSVGHQLSTLNGTNHPFPYTSQSNSFVSSSQQHHHHHVGSAPSGLAFERHFGFFPKSSETSLMNNVSYTGMSLGHNDGKYLLNAAISGNAGVSIPRSMADNGSSNFRMRSSPILSPVFLGNGPYPGVLPTAMESLSDRAKSRWIDNNGSQVDSKKLFQLDLDKIKSGEDTRTTLMIKNIPNKYTSKMLLAAIDEYHKGTYDFLYLPIDFKNKCNVGYAFINMLSPSHIIPFFETFNGKKWEKFNSEKVASLAYARIQGKNALVNHFQNSSLMNEDKRCRPIVFHSDGSEAGDQAIHEHLPSNYNNIQAVKSSELQLSDSLGFPTKDGFHVNLNAN	862

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre4g03206	862	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	43	816	-	-
	Trre4g03206	862	MobiDBLite	consensus disorder prediction	1	20	-	-
	Trre4g03206	862	SUPERFAMILY	RNA-binding domain, RBD	193	356	IPR035979	GO:0003676
	Trre4g03206	862	FunFam	MEI2-like protein 5 isoform 2	185	279	-	-
	Trre4g03206	862	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	281	354	IPR000504	GO:0003723
	Trre4g03206	862	CDD	RRM1_MEI2_like	195	271	IPR034453	-
	Trre4g03206	862	Gene3D	-	185	280	IPR012677	-
	Trre4g03206	862	FunFam	Protein MEI2-like 1	280	375	-	-
	Trre4g03206	862	CDD	RRM3_MEI2_like	701	786	IPR034454	-
	Trre4g03206	862	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	196	269	IPR000504	GO:0003723
	Trre4g03206	862	SMART	rrm1_1	700	776	IPR000504	GO:0003723
	Trre4g03206	862	SMART	rrm1_1	197	265	IPR000504	GO:0003723
	Trre4g03206	862	SMART	rrm1_1	282	350	IPR000504	GO:0003723
	Trre4g03206	862	Pfam	RNA recognition motif 2	698	794	IPR007201	-
	Trre4g03206	862	SUPERFAMILY	RNA-binding domain, RBD	700	785	IPR035979	GO:0003676
	Trre4g03206	862	Gene3D	-	281	377	IPR012677	-
	Trre4g03206	862	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	283	348	IPR000504	GO:0003723
	Trre4g03206	862	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	198	262	IPR000504	GO:0003723
	Trre4g03206	862	CDD	RRM2_MEI2_like	280	350	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre4g03206	Trre-Chr4	36950985	36956057	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre4g03206	191	389	Eukaryotic Initiation Factors Gene Family	AT1G71770	26.009	5.91e-07	51.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre4g03206	-		-	gmx:100787152	1341.64