Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03194 ATGGGTCGTGGTCGTGGGAAAGTAACTATGAAACAAATTGAAAATGAGAAAACTCGGAAATCAGCTTTTAATCAGAGAAAGGAAGGGTTAACAAAGAAAGTGTCCGAATTTTCTAAAAAGTTTGGAGCGGAAGCTTGCTTAATTGTGTATGACGGCGATGATAGTGATGCTAGACCAATGACTTGGCCAAAAGACTTGACAGTCGTACAATCCATGCTTCAAAAATACGAGGTTCAAAAGATTGAGACTGCTCCGAAGAAATTTGATGTGAAAGATTATTTTGCAAATAGGAAGAGTATGGTTGAAGGAGAGATTTCGAGAGTGCACAAGAAGATGGTGATGAACAAGTATCCAACTTGGGGTCGATGTTTCAGTAACATGGAAATGAAGAATCTCAAAGACTTCATTGATATTGTAGATCTCAAGATTCAAGCTTGTAATAAAAGAATCGACATGCTGAAAAATATGCAACAAAATGATCTCATGCAAAACACCGCTAAGATACAAAGCATGGTGGCTCCAGAGAATGTTCCTTCTCAATCAAGTCATCAAGTTGATGATCCTATGAAGCCACTTATTGATATTAGTGAGATGATAGATTTCACCGATCATATAGATTGGGATAATCTAATGGCTGAACACGCGGAATTGGATGCTCAACATGTCGAATTTAATCAAAAAACTGCTGAGATGCAAAGTGTGGTTCCAGAGAATGTTCCTTCTCAATCAAGTCATCAACTTGATGATCCTATGAAGCAAGTTATTGATATGAGTGAGATGATAGATTTCACTAATCATATTGAGTGGGATGATATAATGGCTGAACATGAAGAATGGGATGATCAACTTGTAGAATTTAATGATTGTGCTAATCAAGAGAATGATGTAATTGTCTCTTCACAATCAAGTAAACCTGATGATCCTATGAACCCAATTATTGATATCAGTGAGATGATAGATTTCAGTAATCATGTGGAGTGGGATGATCAAATGACTGAACTTGAAGAATTGGATACTCAACAATTTGTAGAATTTAATGATTGGGCTAATCAACTAGATGTGTCTTGTTTAGCTTCATTTTAG 1083 0.3629 MGRGRGKVTMKQIENEKTRKSAFNQRKEGLTKKVSEFSKKFGAEACLIVYDGDDSDARPMTWPKDLTVVQSMLQKYEVQKIETAPKKFDVKDYFANRKSMVEGEISRVHKKMVMNKYPTWGRCFSNMEMKNLKDFIDIVDLKIQACNKRIDMLKNMQQNDLMQNTAKIQSMVAPENVPSQSSHQVDDPMKPLIDISEMIDFTDHIDWDNLMAEHAELDAQHVEFNQKTAEMQSVVPENVPSQSSHQLDDPMKQVIDMSEMIDFTNHIEWDDIMAEHEEWDDQLVEFNDCANQENDVIVSSQSSKPDDPMNPIIDISEMIDFSNHVEWDDQMTELEELDTQQFVEFNDWANQLDVSCLASF 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03194 360 PRINTS MADS domain signature 5 25 IPR002100 GO:0003677|GO:0046983
Trre4g03194 360 PRINTS MADS domain signature 25 40 IPR002100 GO:0003677|GO:0046983
Trre4g03194 360 CDD MADS_SRF_like 4 90 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre4g03194 360 Coils Coil 13 33 - -
Trre4g03194 360 ProSiteProfiles MADS-box domain profile. 3 50 IPR002100 GO:0003677|GO:0046983
Trre4g03194 360 SUPERFAMILY SRF-like 4 77 IPR036879 GO:0003677|GO:0046983
Trre4g03194 360 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 52 IPR002100 GO:0003677|GO:0046983
Trre4g03194 360 Gene3D - 15 78 IPR036879 GO:0003677|GO:0046983
Trre4g03194 360 SMART madsneu2 3 64 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03194 Trre-Chr4 36787369 36788451 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03194 4 149 Type I MADS-box Gene Family AT5G55690 34.000 1.24e-18 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre4g03194 SRF-TF 9.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03194 - - tpra:123922587 291.197