Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02714 ATGGCTTTTTGGGGTGTTGAAATCAAACCTGGAAAGCCTTTTACTCACACATACGATGGTTCTAAAGGACGCCTTCACATTTCAATGGCCACTTTGGGACTTGGCACTGCAATTACGAAAAGCACACTGCAATGTAATGTGGGAAACAAAAGCCCTGTTTATCTTTGCTCTCTTTATCCTGGAAAAACTGAGTCGTTGCAATTGAATTTGGAGCTAGAGGAAGATGGTAATGTTATTTTCTCTGTCATTGGCCCTCGGAGTATTCATCTCTGCGGTTATTATCTTGCTCATGGCCGCTATACCAATACTCTTGATGAATCGGAATCATATGGAGAAGATATAGCTGATACAGAAACAGAGAAATCTGTTCACAGTGATGAAGATGACTATGATGATAGTTTTATTGATGATGACGGTGATCCAGCAGTTTTCTCACCATCTCCTATTTCCAATGAAGAGGATGCATCTTATGATAGCGGACGGAAAAGTGCGAAAGGCAGACGAAGAAGGCTGAGGAAGAAGTACCAGTTGGTAGAGTCGGATGATGATATCAGTCTTGAAGAAAAGCAAATTGTAAATGACAATATGCATGTACAATCTCAGGAAATTGATAATGAAGATAGTCTACCAATTTCATCGATCTGCAAGAATAAAGCCTCTGGAAGGATCTTGGATCAGGAAATGGATGATATTGTTGACAAAGAAGCGGTCGATGCTGGCAAAAAAGACAAAGAAGACCCTGAGAATAATACTATTGAAACAAAATTGAAAACTGACAATGTTGTTACAGATAATCAGACTCATAGGGAAGCTGAATCTTCAGACCACTTGGCAGTTCCTTGCACTGTTCTGGATGTTGGGGATATTAAAAAGTCAAAGAAAAAGAAGGGAAAGGAAAAAGAAACCAAGAGTTCTTGCACTGACCGTTCCACCGAACTAGATAATGCTGCGCAAGATGAGCAAAAAATGAACACGGCCCAGGATCTCTTGGATCAGGAAATGGCCGATAATGTTGACAAAGAAGCAGTTGATGTTGGAAAAGAAGACGGTGAAGACCCTGAGAGTAGTACTATTGAAACAAAATTGAAAACTGACAATGTTGTTGCAGATATTCAGACTCACAGGGAAGCTGAACCTTCAGATCCCTTAGCAGTTCCTTGCACTCTTCCGGATGTTGGGGATATTAAAAAGTCAAAAAAGAAAAAGAAGGGAAACGAGAAAGAAACCAAGAGTTCTTGTAATGGTCATTCCACCGAACTAGATAATTCTGCGCAAGATGAGCAAAAAATGAACACGGCCCAGGATCTCTTGGGTCAGGAAACTGATAATGTTGACAAAGAAGCAGTTGATGCTGGCAATAATGAACAGCACCAGCAGCAAGCTGATGATAAGAAAGCTGAAACCGCGGATAAAATACTTCCTTCTTCACAGGTTGGTCAAGGACAGGATAAAAAACCAAAGAGAAAAAGGAAAGAACGGTCAAAGGAGGAGACAATTTTTACTACTGATGGTGCTTGTATTAGCAATGCTGTTAACCTGCCACAGGGAAATGAAGGCAATTATCAGGACATTGTTAATAGGGATGTTAAGATTTCAGATAGTGTTGCACTACCTTCCACTGAAACGGATTCTCCAAAGAAAACAAAGAGGAGAAAAAAAGAACATAAAAACAAATCTTCACTTCCTGAAGGTGGCAATGGAAATGCCGAAGGTATCACTCAAGATGAGGAAGCCAACAAAGAGACAGCAGAGTCTGATAGTCTGATTCATAAACTTTCTGAAACGAAAGAGCAACATCAGAAGCTAACAATTGAAAATGTGGACAATGGGGCTCAAGACAAGAAGGTTAAGAAAAAGAAGAAAAGTAAAAGTCAGGGCAGTGAAGTTGTAAATTCTGCTTTGCCTGTATCGGTTGAGCCAAGTACTGAGATGATGAAGGAGGATGGAAATAATATGGAGGATACAAAGTCTTCCCAAGTTAGAACATTGTCAAATGGACTAGTTATTCAAGAGCTAGAAACGGGGAAAGAAAATGGGAAAATTGCTGCATTAGGGAAAAAGATCAGCATCAATTACACTGGCAAGTTGAAGGAAAATGGTGCGGAGGTTGAGTCAAATGCTGGCCAAGCCTCTTTCAAATTTCGCCTTGGTAAAGGAGAAGTTATTGAGGGTTTGGATATTGGCCTTGAAGGCATGCGAGTTGGAGAAAAGAGAAGACTCATAATTCCACCATCAATGACGTCTAAGAAGAATGGTGACAGTGAAAATATACCGCCGAATTCATGGTTGATATATGAATTGGAACTTGTTAAAGTTCATTGA 2322 0.4009 MAFWGVEIKPGKPFTHTYDGSKGRLHISMATLGLGTAITKSTLQCNVGNKSPVYLCSLYPGKTESLQLNLELEEDGNVIFSVIGPRSIHLCGYYLAHGRYTNTLDESESYGEDIADTETEKSVHSDEDDYDDSFIDDDGDPAVFSPSPISNEEDASYDSGRKSAKGRRRRLRKKYQLVESDDDISLEEKQIVNDNMHVQSQEIDNEDSLPISSICKNKASGRILDQEMDDIVDKEAVDAGKKDKEDPENNTIETKLKTDNVVTDNQTHREAESSDHLAVPCTVLDVGDIKKSKKKKGKEKETKSSCTDRSTELDNAAQDEQKMNTAQDLLDQEMADNVDKEAVDVGKEDGEDPESSTIETKLKTDNVVADIQTHREAEPSDPLAVPCTLPDVGDIKKSKKKKKGNEKETKSSCNGHSTELDNSAQDEQKMNTAQDLLGQETDNVDKEAVDAGNNEQHQQQADDKKAETADKILPSSQVGQGQDKKPKRKRKERSKEETIFTTDGACISNAVNLPQGNEGNYQDIVNRDVKISDSVALPSTETDSPKKTKRRKKEHKNKSSLPEGGNGNAEGITQDEEANKETAESDSLIHKLSETKEQHQKLTIENVDNGAQDKKVKKKKKSKSQGSEVVNSALPVSVEPSTEMMKEDGNNMEDTKSSQVRTLSNGLVIQELETGKENGKIAALGKKISINYTGKLKENGAEVESNAGQASFKFRLGKGEVIEGLDIGLEGMRVGEKRRLIIPPSMTSKKNGDSENIPPNSWLIYELELVKVH 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02714 773 Pfam Nucleoplasmin-like domain 3 95 IPR041232 -
Trre4g02714 773 MobiDBLite consensus disorder prediction 114 128 - -
Trre4g02714 773 MobiDBLite consensus disorder prediction 287 316 - -
Trre4g02714 773 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 41 772 - -
Trre4g02714 773 MobiDBLite consensus disorder prediction 109 172 - -
Trre4g02714 773 Gene3D Nucleoplasmin core domain 1 99 - -
Trre4g02714 773 Gene3D - 639 773 IPR046357 GO:0003755
Trre4g02714 773 MobiDBLite consensus disorder prediction 235 572 - -
Trre4g02714 773 MobiDBLite consensus disorder prediction 235 253 - -
Trre4g02714 773 MobiDBLite consensus disorder prediction 317 331 - -
Trre4g02714 773 MobiDBLite consensus disorder prediction 393 414 - -
Trre4g02714 773 MobiDBLite consensus disorder prediction 594 615 - -
Trre4g02714 773 MobiDBLite consensus disorder prediction 333 359 - -
Trre4g02714 773 SUPERFAMILY FKBP-like 643 772 - -
Trre4g02714 773 MobiDBLite consensus disorder prediction 594 660 - -
Trre4g02714 773 MobiDBLite consensus disorder prediction 415 439 - -
Trre4g02714 773 MobiDBLite consensus disorder prediction 482 499 - -
Trre4g02714 773 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 685 773 IPR001179 GO:0003755
Trre4g02714 773 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 682 770 IPR001179 GO:0003755
Trre4g02714 773 MobiDBLite consensus disorder prediction 501 522 - -
Trre4g02714 773 MobiDBLite consensus disorder prediction 440 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02714 Trre-Chr4 29381273 29388999 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02714 685 770 Calmodulin-binding Proteins AT5G48570 36.782 1.02e-11 66.2