Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02712 ATGGCTTTTTGGGGTGTTGAAATCAAACCTGGAAAGCCTTTTACTCACACATACGATGGTTCTAAAGGACGCCTTCACATTTCAATGGCCACTTTGGGACTTGGCACTGCAATTACGAAAAGCACACTGCAATGTAATGTGGGAAACAAAAGCCCTGTTTATCTTTGCTCTCTTTATCCTGGAAAAACTGAGTCGTTGCAATTGAATTTGGAGCTAGAGGAAGATGGTAATGTTATTTTCTCTGTCATTGGCCCTCGGAGTATTCATCTCTGCGGTTATTATCTTGCTCATGGCCGCTATACCAATACTCTTGATGAATCGGAATCATATGGAGAAGATATAGCTGATACAGAAACAGAGAAATCTGTTCACAGTGATGAAGATGACTATGATGATAGTTTTATTGATGATGACGGTGATCCAGCAGTTTTCTCACCATCTCCTATTTCCAATGAAGAGGATGCATCTTATGATAGCGGACGGAAAAGTGCGAAAGGCAGACGAAGAAGGCTGAGGAAGAAGTACCAGTTGGTAGAGTCGGATGATGATATCAGTCTTGAAGAAAAGCAAATTGTAAATGACAATATGCATGTACAATCTCAGGAAATTGATAATGAAGATAGTCTACCAATTTCATCGATCTGCAAGAATAAAGCCTCTGGAAGGATCTTGGATCAGGAAATGGATGATATTGTTGACAAAGAAGCGGTCGATGCTGGCAAAAAAGACAAAGAAGACCCTGAGAATAATACTATTGAAACAAAATTGAAAACTGACAATGTTGTTACAGATAATCAGACTCATAGGGAAGCTGAATCTTCAGACCACTTGGCAGTTCCTTGCACTGTTCTGGATGTTGGGGATATTAAAAAGTCAAAGAAAAAGAAGGGAAAGGAAAAAGAAACCAAGAGTTCTTGCACTGACCGTTCCACCGAACTAGATAATGCTGCGCAAGATGAGCAAAAAATGAACACGGCCCAGGATCTCTTGGATCAGGAAATGGCCGATAATGTTGACAAAGAAGCAGTTGATGTTGGAAAAGAAGACGGTGAAGACCCTGAGAGTAGTACTATTGAAACAAAATTGAAAACTGACAATGTTGTTGCAGATATTCAGACTCACAGTAGGGAAGCTGAACCTTCAGATCCCTTAGCAGTTCCTTGCACTCTTCCGGATGTTGGGGATATTAAAAAGTCAAAAAAGAAAAAGAAGGGAAACGAGAAAGAAACCAAGAGTTCTTGTAATGGTCATTCCACCGAACTAGATAATTCTGCGCAAGATGAGCAAAAAATGAACACGGCCCAGGATCTCTTGGGTCAGGAAACTGATAATGTTGACAAAGAAGCAGTTGATGCTGGCAATAATGAACAGCACCAGCAGCAAGCTGATGATAAGAAAGCTGAAACCGCGGATAAAATACTTCCTTCTTCACAGGTTGGTCAAGGACAGGATAAAAAACCAAAGAGAAAAAGGAAAGAACGGTCAAAGGAGGAGACAATTTTTACTACTGATGGTGCTTGTATTAGCAATGCTGTTAACCTGCCACAGGGAAATGAAGGCAATTATCAGGACATTGTTAATAGGGATGTTAAGATTTCAGATAGTGTTGCACTACCTTCCACTGAAACGGATTCTCCAAAGAAAACAAAGAGGAGAAAAAAAGAACATAAAAACAAATCTTCACTTCCTGAAGGTGGCAATGGAAATGCCGAAGGTATCACTCAAGATGAGGAAGCCAACAAAGAGACAGCAGAGTCTGATAGTCTGATTCATAAACTTTCTGAAACGAAAGAGCAACATCAGAAGCTAACAATTGAAAATGTGGACAATGGGGCTCAAGACAAGAAGGTTAAGAAAAAGAAGAAAAGTAAAAGTCAGGGCAGTGAAGTTGTAAATTCTGCTTTGCCTGTATCGGTTGAGCCAAGTACTGAGATGATGAAGGAGGATGGAAATAATATGGAGGATACAAAGTCTTCCCAAGTTAGAACATTGTCAAATGGACTAGTTATTCAAGAGCTAGAAACGGGGAAAGAAAATGGGAAAATTGCTGCATTAGGGAAAAAGATCAGCATCAATTACACTGGCAAGTTGAAGGAAAATGGTGCGGAGGTTGAGTCAAATGCTGGCCAAGCCTCTTTCAAATTTCGCCTTGGTAAAGGAGAAGTTATTGAGGGTTTGGATATTGGCCTTGAAGGCATGCGAGTTGGAGAAAAGAGAAGACTCATAATTCCACCATCAATGACGTCTAAGAAGAATGGTGACAGTGAAAATATACCGCCGAATTCATGGTTGATATATGAATTGGAACTTGTTAAAGTTCATTGA 2325 0.4009 MAFWGVEIKPGKPFTHTYDGSKGRLHISMATLGLGTAITKSTLQCNVGNKSPVYLCSLYPGKTESLQLNLELEEDGNVIFSVIGPRSIHLCGYYLAHGRYTNTLDESESYGEDIADTETEKSVHSDEDDYDDSFIDDDGDPAVFSPSPISNEEDASYDSGRKSAKGRRRRLRKKYQLVESDDDISLEEKQIVNDNMHVQSQEIDNEDSLPISSICKNKASGRILDQEMDDIVDKEAVDAGKKDKEDPENNTIETKLKTDNVVTDNQTHREAESSDHLAVPCTVLDVGDIKKSKKKKGKEKETKSSCTDRSTELDNAAQDEQKMNTAQDLLDQEMADNVDKEAVDVGKEDGEDPESSTIETKLKTDNVVADIQTHSREAEPSDPLAVPCTLPDVGDIKKSKKKKKGNEKETKSSCNGHSTELDNSAQDEQKMNTAQDLLGQETDNVDKEAVDAGNNEQHQQQADDKKAETADKILPSSQVGQGQDKKPKRKRKERSKEETIFTTDGACISNAVNLPQGNEGNYQDIVNRDVKISDSVALPSTETDSPKKTKRRKKEHKNKSSLPEGGNGNAEGITQDEEANKETAESDSLIHKLSETKEQHQKLTIENVDNGAQDKKVKKKKKSKSQGSEVVNSALPVSVEPSTEMMKEDGNNMEDTKSSQVRTLSNGLVIQELETGKENGKIAALGKKISINYTGKLKENGAEVESNAGQASFKFRLGKGEVIEGLDIGLEGMRVGEKRRLIIPPSMTSKKNGDSENIPPNSWLIYELELVKVH 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02712 774 Pfam Nucleoplasmin-like domain 3 95 IPR041232 -
Trre4g02712 774 MobiDBLite consensus disorder prediction 114 128 - -
Trre4g02712 774 MobiDBLite consensus disorder prediction 287 316 - -
Trre4g02712 774 MobiDBLite consensus disorder prediction 416 440 - -
Trre4g02712 774 MobiDBLite consensus disorder prediction 109 172 - -
Trre4g02712 774 MobiDBLite consensus disorder prediction 235 321 - -
Trre4g02712 774 Gene3D Nucleoplasmin core domain 1 99 - -
Trre4g02712 774 SUPERFAMILY FKBP-like 644 773 - -
Trre4g02712 774 MobiDBLite consensus disorder prediction 441 471 - -
Trre4g02712 774 MobiDBLite consensus disorder prediction 595 616 - -
Trre4g02712 774 MobiDBLite consensus disorder prediction 235 253 - -
Trre4g02712 774 MobiDBLite consensus disorder prediction 595 661 - -
Trre4g02712 774 MobiDBLite consensus disorder prediction 483 500 - -
Trre4g02712 774 MobiDBLite consensus disorder prediction 333 359 - -
Trre4g02712 774 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 41 773 - -
Trre4g02712 774 MobiDBLite consensus disorder prediction 333 573 - -
Trre4g02712 774 MobiDBLite consensus disorder prediction 502 523 - -
Trre4g02712 774 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 683 771 IPR001179 GO:0003755
Trre4g02712 774 Gene3D - 640 774 IPR046357 GO:0003755
Trre4g02712 774 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 686 774 IPR001179 GO:0003755
Trre4g02712 774 MobiDBLite consensus disorder prediction 394 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02712 Trre-Chr4 29381273 29388999 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02712 686 771 Calmodulin-binding Proteins AT5G48570 36.782 1.01e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02712 K14826 - jre:109006154 428.328