Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02697 ATGGAACAGTTGAAATTGGATGCAAAAGAGGATAGTCCTCTTCGGCACAAGCCAAAAAATAACAATGCGGTCGAGTCTTCTGATAGTCTGAGAAGTAAAAAGGTATCAGCTCGATGGGATCCAACTGAAGCATGTCGGCCAATAATGGACGAAGCACCTGTGTTTCATCCGACTATTGAAGAATTTGAAGATACACTAAGTTATATAGCAAAGATACGGCCGTTAGCTGAACCTTATGGCATATGTAGGATTGTCCCTCCGGCTTGTTGGGTTCCACCTTGCCTTCTTAAGGAGAAAGATATATGGGAAAATGCTGAATTTTCCACCCGTATTCAGCAAATTGATTTACTTCAAAATAGAGAACCTATGAAGAAAAAAAGTAGGGGAAGGAAACGGAAACGTAGAAGTAGAAAGAACTCCAAAACAGGAACATGTAGGAGAGTTTCCAATTCTGCTTCTGAAGCTAAAAATGCTTCTGAAGCTGATGAGAAATATGGATTCCAATCAGGGTCGGACTTCACGTTTAAAGACTTTCAGCAATATGCTAAATACTTTAAGGAATGTTACTTTGGGTTGAAAGATGCCAATGAAGATGGAAAAGTCAGTGATAGTAACCAGGAAAAGAGACGAATGCCCTCCGAGGAGGAAATTGAAGGGGAATACTGGCGAATAGTTGAACAACCAACTGATGAAGTCGAGGTGTATTATGGAGCTGATTTAGAAACTGGAGTATTTGGAAGTGGTTTTCCTAAGGCATCATCATCCTTAAATAAGGGTTATCCGGACCAGTATGCCCTTTCTGGTTGGAATCTAAATAACTTCCCTCGACTACCAGGTTCTGTACTAAGTTTTGAAGGAAGTGATATCTCTGGAGTACTAGTTCCATGGCTGTATGTTGGTATGTGCTTTTCATCATTTTGCTGGCATGTTGAGGATCATCACCTCTATTCGCTTAATTATCTACACTTTGGTGACCCAAAGATATGGTATGGAGTACCTGGAAACCATGCTTCCGCTTTTGAAGATGCAATGAAGAAGCACTTGCCTGATCTGTTCGAGGAAGTGCCAAATCTACTCAATGATCTGGTTACTCAGTTATCTCCATCAATTCTTAAATCTGAGGGAGTTCCCGTATATCGCATTGTTCAGCATTCTGGGGAATTTGTCATTACCTTTCCGAGGGGGTACCACTCTGGGTTCAACTGTGGGTTCAACTGTGCAGAAGCAGTAAATGTGGCTCCTGTTGATTGGTTAATGCATGGCCTGAATGCTGTTGAGCTTTACAGTTTACAACGCCGTAAGACATCGTTGTCACATGACAAGCTTTTATTTGGATCATCACTGGAAGCTATACGAGCCCTTGCAGAATTAACTCTTCATGGAAAGGAAACTCCGAAAAATTTGAAATGGAAAAGTGTCTGTGGAAAGGATGGAGTTCTTACTAAGGCATTTAAGGCAAGGATAGAGATGGAAGAAGAGCGGCTAGACTGTCTTCCAACTCATTTTAAGTTGCTGAAGATGACCAATGACTTCGACGTCCATACCGAAAGAGAATGCTTCTCTTGCTTCTACGACTTGTACCTATCTGCTGTGGGTTGTGAGTGCTCTCCTGATAGGTATTCTTGTCTGAAGCATGCTAGTTCGTTCTGCTCGTGTGAATTGGAAAAAAGATTTGTTCTTTCTCGATATAATATGAGCGAGCTAAACAAATTGCATGAAGCACTAGAAGGAGATTCTCTTGCTCTTCAGTTATGGGAAAATGAAAACTTCGGAATGGTTTCTGGCGACGCCAATGAGATTTGCATAGATAAACAAGAGATGGAGAGAAACAAGGGTCTTGAAGATACTGATTGCGAAGGAACCAAGGATAGTTCAAATATAAATGCACCTAGTAATGTTACTTCAGAGCTAATGCAGTCTGAATCTCATCTTGTAACTCTTAGTGCACCAAATGGAAGTACAGATAGTGATAGTGACAATAAGATGGTCGTAGACAAAGATAAGGTGGATCAGGCAGGTTCTCTGGATTTGAATCTTGATGTTATATCTGCTGAAAATGAGAAGTGTTTGCCGCATATTGCTGATAACCATAACAACAAGGGTGATTCAGTAGAGGAAAAACTATGTTGTTCGGAGACCAAAAAAGAACACGACAACATGGAACTTGATGGTGTGGGTGACCTATTACATTCATCTTCTGTTGTGAAGACAGAAGTTTCATCGTGCTTGAGGGATGTTAACAATTCTTGTACATCTGACGGTGGAAAATATGAGGCGGATCTTCAAATGGATTCAGATTCAAGAAAGAAACCCAAAATTGCATTTGAAAAAGAAGTCATAAACCCCACAAGTGCGAGTATATCTTTAACACAGGAAAGCATCCTAATGCAAATTTTTGGTACTTCTGTCAAGCCTATTAGTTTGGGATCTGTTGTTCATGGAAAGCTATGGTGTAGTAAGCATGCTATATATCCAAAAGGATTCAAGAGTCGAGTTAATTTCTTTAGTATCGTCAATCCAACAAGAATTTGTAGCTATGTTTCTGAAGTTATTGATGCTGGACTTCTTGGACCTCTTTTCAAGGTTACAATGGAAGAATGTTCAAGTGACGCATTCACCGACACCTCAGCTGATAAGTGTTGGGAATCAGTTCTAAAGAGACTACATAATGAAATCATGGAGCGAAGGAATCGAGGTGAACTTGAACTTCCATCCTTAGAGCTTCTGAAAAGCGTTAACGGACTTAGAATGTTTGGCTTCCTTTTGCCGTCCATTATCCAGGCCATCGAAGCTCAAGATCCAAGTCATCAGTGTGCAGAATATTGGAATCACAAAGCTTTCCCTACATCTCCAGGCAGTGTCATTGATAACTGCAATTGTTCAAGTAGCCCTTTAGATAATAATGTCAACACCAAAGTTTTTGGTATCCATTTGATTGATCAGGCAAAGGACAGCATAGGAGGAAGTTGTCATTCTCTTGAAGAGATGAAATCAATATTACAAAAGGCAAATCCTGATGAACTAAGCTCATTGCGCAAGTTACTCAATTCTGACACACAATGCTCCGAGTGGAGAATGGCATTGACATCACTGATGGATGAGATTCAGAAAGCTTTGTAG 3120 0.4045 MEQLKLDAKEDSPLRHKPKNNNAVESSDSLRSKKVSARWDPTEACRPIMDEAPVFHPTIEEFEDTLSYIAKIRPLAEPYGICRIVPPACWVPPCLLKEKDIWENAEFSTRIQQIDLLQNREPMKKKSRGRKRKRRSRKNSKTGTCRRVSNSASEAKNASEADEKYGFQSGSDFTFKDFQQYAKYFKECYFGLKDANEDGKVSDSNQEKRRMPSEEEIEGEYWRIVEQPTDEVEVYYGADLETGVFGSGFPKASSSLNKGYPDQYALSGWNLNNFPRLPGSVLSFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHFGDPKIWYGVPGNHASAFEDAMKKHLPDLFEEVPNLLNDLVTQLSPSILKSEGVPVYRIVQHSGEFVITFPRGYHSGFNCGFNCAEAVNVAPVDWLMHGLNAVELYSLQRRKTSLSHDKLLFGSSLEAIRALAELTLHGKETPKNLKWKSVCGKDGVLTKAFKARIEMEEERLDCLPTHFKLLKMTNDFDVHTERECFSCFYDLYLSAVGCECSPDRYSCLKHASSFCSCELEKRFVLSRYNMSELNKLHEALEGDSLALQLWENENFGMVSGDANEICIDKQEMERNKGLEDTDCEGTKDSSNINAPSNVTSELMQSESHLVTLSAPNGSTDSDSDNKMVVDKDKVDQAGSLDLNLDVISAENEKCLPHIADNHNNKGDSVEEKLCCSETKKEHDNMELDGVGDLLHSSSVVKTEVSSCLRDVNNSCTSDGGKYEADLQMDSDSRKKPKIAFEKEVINPTSASISLTQESILMQIFGTSVKPISLGSVVHGKLWCSKHAIYPKGFKSRVNFFSIVNPTRICSYVSEVIDAGLLGPLFKVTMEECSSDAFTDTSADKCWESVLKRLHNEIMERRNRGELELPSLELLKSVNGLRMFGFLLPSIIQAIEAQDPSHQCAEYWNHKAFPTSPGSVIDNCNCSSSPLDNNVNTKVFGIHLIDQAKDSIGGSCHSLEEMKSILQKANPDELSSLRKLLNSDTQCSEWRMALTSLMDEIQKAL 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02697 1039 Pfam C5HC2 zinc finger 519 571 IPR004198 -
Trre4g02697 1039 MobiDBLite consensus disorder prediction 1 22 - -
Trre4g02697 1039 Gene3D - 800 939 - -
Trre4g02697 1039 PANTHER LYSINE-SPECIFIC DEMETHYLASE 46 893 - -
Trre4g02697 1039 SMART fyrc_3 859 953 IPR003889 GO:0005634
Trre4g02697 1039 SUPERFAMILY Clavaminate synthase-like 203 444 - -
Trre4g02697 1039 SMART cupin_9 263 429 IPR003347 -
Trre4g02697 1039 MobiDBLite consensus disorder prediction 124 142 - -
Trre4g02697 1039 MobiDBLite consensus disorder prediction 116 161 - -
Trre4g02697 1039 ProSiteProfiles JmjN domain profile. 52 93 IPR003349 -
Trre4g02697 1039 FunFam Putative lysine-specific demethylase JMJ16 801 939 - -
Trre4g02697 1039 MobiDBLite consensus disorder prediction 1 38 - -
Trre4g02697 1039 Pfam JmjC domain, hydroxylase 296 412 IPR003347 -
Trre4g02697 1039 Pfam F/Y-rich N-terminus 806 850 IPR003888 GO:0005634
Trre4g02697 1039 SMART fyrn_3 809 853 IPR003888 GO:0005634
Trre4g02697 1039 Gene3D Cupin 37 413 - -
Trre4g02697 1039 ProSiteProfiles FYR domain FYRN motif profile. 795 853 IPR003888 GO:0005634
Trre4g02697 1039 ProSiteProfiles JmjC domain profile. 263 429 IPR003347 -
Trre4g02697 1039 Pfam jmjN domain 53 86 IPR003349 -
Trre4g02697 1039 ProSiteProfiles FYR domain FYRC motif profile. 855 945 IPR003889 GO:0005634
Trre4g02697 1039 Pfam F/Y rich C-terminus 857 944 IPR003889 GO:0005634
Trre4g02697 1039 SMART JmjN_1 51 92 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02697 Trre-Chr4 29200053 29205355 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02697 799 979 JUMONJI Transcription Factor Family AT1G30810 48.901 1.76e-49 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre4g02697 JmjC 3e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02697 K11446 - gmx:100801775 1527.69