Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02679 ATGGAGAGTTCAAAGTGGGATTTGAATGATTGGAGATGGGATGGTGATCTTTTTACTGCTAAGCAACTGAATTCAGTGCCAACAGATTGTCGAAATCGTCAACTTTTACCGGTTGATCCCCAAGTATCTCAAAATGTTGATGCTTCTAACAATTTGGTTTCTGGTGAAAGAAGTAGAGAATTGGAGAAGAGAAGGAGAGATTTTGTTGGTGAAGGGTTGGAAATGAATGATGATATTGGTTCTCTTAATTTGAATCTTGGGGGTCAAGTTTACCCTATCATGGAAGGGGAAGAAAAAAGTGGTAAGAAAACGAAGATTGGTGTTACTACTTCGAATCGTGCTGTTTGTCAGGTGGAGGATTGTAGGGCGGATCTTAGTAACGCAAAGGATTACCATCGTCGCCATAAAGTTTGTGATGTGCATTCTAAGGCTAGTAAAGCGCTGGTTGGAAATGTTATGCAGCGATTCTGTCAACAGTGTAGCAGGTTTCATGCTCTTGAAGAGTTTGATGAAGGGAAGAGAAGCTGCCGTAGGCGACTTGCTGGCCATAATAAGAGGAGGAGGAAAACACATCCTGATGGTGCTGAAGTTAATGGAGGCCCTCCAAATGAAGAAAGGGGCAGTAGCTATCTATTGATGAGTCTACTAAGGATACTGTCCAATATGCATTCAAGTGGGGAAGATCATACAAGAAACGTGGATGTCATATCTCGTCTGGTTGGGAACCTTACAAGTTTAGCTGGTACATTTAACGGAAGAAATATAACCTCCTTATTGGAGGGACCTCAAGATTTAGTAAAAGCGGGGACATCTGGAGCTGCACAGAATGTTCCAAACTCAAATACAAATGGCGCTGAACCACCAAGACCTATTGATTCTCGTGTTGAAATGAGTAATGGTCTAATCCATCAGAACCCTCCCGAGTCTAGGTTACCGTGTGCGACAGTTCCTGTCAATCACACGACACAAAAATGTATACCTTCAAACAAGGTTGGTGGAGTAGGATGTTTAAAACCTCCTTTGGTACCACACTCGTCAAATGTACTTCCTTCAAGGGGTAGCCTTCCACCTCGACCAGTTGCCACAGAGACTACAGCTGGAAGAAATGGGTTAAGTAATATTGACCTGAATAGCGTATACCATGACGTGGAGGATTATGTTGAGAACCCCACAAATTCTCGTCCACATGTGGCTTTAGGGGTTGGGTCCCATGATCATCCTTCACCGGTACAATGTGATTCTCTCAAGTCAAGTCCACCACAGACGAGTAGAAACTCGGATTCAACCTCTACCCAGTCACCGTCTAGTTCTAGTGGAGAAGGGCAGAGTCGAACAGATCGAATTGTTTTCAAACTCTTTGGTAAGGATCCTAATGATTTCCCCCTTGCTCTTCGATCACAGATCCTTAGCTGGTTATCCCACAGTCCCACCGAGATAGAGAGCTATATAAGACCAGGATGTATTATTTTAACTATATGTCTCCGCCTAGAAAATTCTGCATGGAATGAGCTATGCTATAATCTGGGGTCCAGCTTGAGAAAGCTTCTTGCTGCATCAAATGATTCTCTTTGGAGAACAGGATGGATATATACAAGAGTGCGGCACTCTGTAGCTATTCTGTATAATGGTCAGGTGGTCATAGATCTGCCATTGCGTCTTGGAAGCCCACAAAATTGTCAGATTTTGTGCGTTAAACCCCTTGCTGTTTCTGCCAGTGCAGACGTAAAATTTACTGTGAAAGGGTTAAACCTTTTCCTGTCTAGTAGTACAAGGTTGCTCTGTGCACTTGAAGGGAAGTATCTGGTAGATGATATGTGTTATGATTTGATTGATGGTGCTGATGCAGCCATCGGACATCATGAGCTTCAGAATCTCAGTTTCTCTTGTCATATACCAAATATGACTGGAAGAGGGTTTATTGAGGTTGAAGATAATGGTCTCAGCAGCTGTTCCTTTCCATTCATAGTTGCCGAGCCTGAAATTTGTTCCGAGATATGTAATCTGGAGACTGTCATTGAAGCAGCAGAGACTGCTGATGACGTCCAGATTAAAGCCAAATTAATGGAAGAAAAGACTCGAGCAATGAATTTCGTACAAGAAATGGGTTGGCTTCTTCATAGAATTCGTATGAAATTTAGGCTAGGGTCAATGGCACCGGTTCAAGATCCCTTCCATTTTAATCGCTATTCATGGCTTGTCGGCTTCTCTATGGACCACGATTGGTGCGCCGTGATGAAAAAACTCCTGGACATTATCTTTGAGGGTGAAGTTGATACTGGAGAACATACCTCGGCAGAGCTTGCGTTGTTAAACATGGGTCTTCTTCACAAAGCTGTAAAGAGAAATTGTAGGCCTATGGTGGAACTACTGTTAAACTTTGTGCCAGTTAAAGCTTCAGATGGTGGGGACAGTAAAGAGATGCTAGTCAACAAGTCCCCTGAAAGGTTCCTGTTTAGACCTGATACTGTTGGGCCTGCTGGGTTGACTCCCCTTCATGTTGCAGCTAGTATGAATGGCTATGAGAATGTATTGGATGCGTTAACTGATGATCCGGGAATGGTGGGAATTGAGGCATGGAAAAGTGCTAAAGACAACACAGGTTTGACACCAAATGACTATGCATCCCTTAAGGGCCACTACTCCTACATTCAACTTGTGCAGAGGAAAACAAGCAAGAAAAACCAAACTCAACATGTCCTTGACATACCTGGCACCCTTGTAGACGGAAACACGAAGAAACAATCAGATTTGCATAAGTCGTCAAAAGTTTTAAGTTTCCATACAGAGAAGATTGCAACAACATCAATGCCAAATCATTGTGGGCTATGCCAACAGAAGTTGGCCTACAGCGGCAGCGGCGGCATGAGGAGGGCACTTGTTTATAGGCCTGCGATGCTTTCAATGGTTGCAATTGCAGCTGTTTGTGTCTGTGTGGCTTTGCTCTTCAAAAGCTCACCGAGAGTTTACTATGTCTTCCAGCCTTTCAGCTGGGAATCATTGGACTATGGTTCGATATAA 3018 0.4344 MESSKWDLNDWRWDGDLFTAKQLNSVPTDCRNRQLLPVDPQVSQNVDASNNLVSGERSRELEKRRRDFVGEGLEMNDDIGSLNLNLGGQVYPIMEGEEKSGKKTKIGVTTSNRAVCQVEDCRADLSNAKDYHRRHKVCDVHSKASKALVGNVMQRFCQQCSRFHALEEFDEGKRSCRRRLAGHNKRRRKTHPDGAEVNGGPPNEERGSSYLLMSLLRILSNMHSSGEDHTRNVDVISRLVGNLTSLAGTFNGRNITSLLEGPQDLVKAGTSGAAQNVPNSNTNGAEPPRPIDSRVEMSNGLIHQNPPESRLPCATVPVNHTTQKCIPSNKVGGVGCLKPPLVPHSSNVLPSRGSLPPRPVATETTAGRNGLSNIDLNSVYHDVEDYVENPTNSRPHVALGVGSHDHPSPVQCDSLKSSPPQTSRNSDSTSTQSPSSSSGEGQSRTDRIVFKLFGKDPNDFPLALRSQILSWLSHSPTEIESYIRPGCIILTICLRLENSAWNELCYNLGSSLRKLLAASNDSLWRTGWIYTRVRHSVAILYNGQVVIDLPLRLGSPQNCQILCVKPLAVSASADVKFTVKGLNLFLSSSTRLLCALEGKYLVDDMCYDLIDGADAAIGHHELQNLSFSCHIPNMTGRGFIEVEDNGLSSCSFPFIVAEPEICSEICNLETVIEAAETADDVQIKAKLMEEKTRAMNFVQEMGWLLHRIRMKFRLGSMAPVQDPFHFNRYSWLVGFSMDHDWCAVMKKLLDIIFEGEVDTGEHTSAELALLNMGLLHKAVKRNCRPMVELLLNFVPVKASDGGDSKEMLVNKSPERFLFRPDTVGPAGLTPLHVAASMNGYENVLDALTDDPGMVGIEAWKSAKDNTGLTPNDYASLKGHYSYIQLVQRKTSKKNQTQHVLDIPGTLVDGNTKKQSDLHKSSKVLSFHTEKIATTSMPNHCGLCQQKLAYSGSGGMRRALVYRPAMLSMVAIAAVCVCVALLFKSSPRVYYVFQPFSWESLDYGSI 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02679 1005 Pfam SBP domain 116 189 IPR004333 GO:0003677
Trre4g02679 1005 Coils Coil 1005 1005 - -
Trre4g02679 1005 MobiDBLite consensus disorder prediction 410 443 - -
Trre4g02679 1005 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 100 829 IPR044817 GO:0003677
Trre4g02679 1005 SUPERFAMILY Ankyrin repeat 771 887 IPR036770 -
Trre4g02679 1005 Gene3D - 756 903 IPR036770 -
Trre4g02679 1005 FunFam Squamosa promoter-binding-like protein 14 107 177 - -
Trre4g02679 1005 Gene3D - 107 177 IPR036893 GO:0003677|GO:0005634
Trre4g02679 1005 MobiDBLite consensus disorder prediction 346 373 - -
Trre4g02679 1005 SUPERFAMILY SBT domain 114 194 IPR036893 GO:0003677|GO:0005634
Trre4g02679 1005 ProSiteProfiles Zinc finger SBP-type profile. 113 190 IPR004333 GO:0003677
Trre4g02679 1005 MobiDBLite consensus disorder prediction 180 206 - -
Trre4g02679 1005 MobiDBLite consensus disorder prediction 387 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02679 Trre-Chr4 28379729 28387353 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02679 3 1004 SBP-box Gene Family AT3G60030 46.124 0.0 768
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre4g02679 SBP 3.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02679 - - gmx:100792774 1531.15