Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02678 ATGGATGCTAAATTTGAGGGTAAAAATAAGCATTTGTATGGACCAGTAGTGCCTGAGTTGAAGAGTGGTAGTGTTGGAATGGAGAGTTCAAAGTGGGATTTGAATGATTGGAGATGGGATGGTGATCTTTTTACTGCTAAGCAACTGAATTCAGTGCCAACAGATTGTCGAAATCGTCAACTTTTACCGGTTGATCCCCAAGTATCTCAAAATGTTGATGCTTCTAACAATTTGGTTTCTGGTGAAAGAAGTAGAGAATTGGAGAAGAGAAGGAGAGATTTTGTTGGTGAAGGGTTGGAAATGAATGATGATATTGGTTCTCTTAATTTGAATCTTGGGGGTCAAGTTTACCCTATCATGGAAGGGGAAGAAAAAAGTGGTAAGAAAACGAAGATTGGTGTTACTACTTCGAATCGTGCTGTTTGTCAGGTGGAGGATTGTAGGGCGGATCTTAGTAACGCAAAGGATTACCATCGTCGCCATAAAGTTTGTGATGTGCATTCTAAGGCTAGTAAAGCGCTGGTTGGAAATGTTATGCAGCGATTCTGTCAACAGTGTAGCAGGTTTCATGCTCTTGAAGAGTTTGATGAAGGGAAGAGAAGCTGCCGTAGGCGACTTGCTGGCCATAATAAGAGGAGGAGGAAAACACATCCTGATGGTGCTGAAGTTAATGGAGGCCCTCCAAATGAAGAAAGGGGCAGTAGCTATCTATTGATGAGTCTACTAAGGATACTGTCCAATATGCATTCAAGTGGGGAAGATCATACAAGAAACGTGGATGTCATATCTCGTCTGGTTGGGAACCTTACAAGTTTAGCTGGTACATTTAACGGAAGAAATATAACCTCCTTATTGGAGGGACCTCAAGATTTAGTAAAAGCGGGGACATCTGGAGCTGCACAGAATGTTCCAAACTCAAATACAAATGGCGCTGAACCACCAAGACCTATTGATTCTCGTGTTGAAATGAGTAATGGTCTAATCCATCAGAACCCTCCCGAGTCTAGGTTACCGTGTGCGACAGTTCCTGTCAATCACACGACACAAAAATGTATACCTTCAAACAAGGTTGGTGGAGTAGGATGTTTAAAACCTCCTTTGGTACCACACTCGTCAAATGTACTTCCTTCAAGGGGTAGCCTTCCACCTCGACCAGTTGCCACAGAGACTACAGCTGGAAGAAATGGGTTAAGTAATATTGACCTGAATAGCGTATACCATGACGTGGAGGATTATGTTGAGAACCCCACAAATTCTCGTCCACATGTGGCTTTAGGGGTTGGGTCCCATGATCATCCTTCACCGGTACAATGTGATTCTCTCAAGTCAAGTCCACCACAGACGAGTAGAAACTCGGATTCAACCTCTACCCAGTCACCGTCTAGTTCTAGTGGAGAAGGGCAGAGTCGAACAGATCGAATTGTTTTCAAACTCTTTGGTAAGGATCCTAATGATTTCCCCCTTGCTCTTCGATCACAGATCCTTAGCTGGTTATCCCACAGTCCCACCGAGATAGAGAGCTATATAAGACCAGGATGTATTATTTTAACTATATGTCTCCGCCTAGAAAATTCTGCATGGAATGAGCTATGCTATAATCTGGGGTCCAGCTTGAGAAAGCTTCTTGCTGCATCAAATGATTCTCTTTGGAGAACAGGATGGATATATACAAGAGTGCGGCACTCTGTAGCTATTCTGTATAATGGTCAGGTGGTCATAGATCTGCCATTGCGTCTTGGAAGCCCACAAAATTGTCAGATTTTGTGCGTTAAACCCCTTGCTGTTTCTGCCAGTGCAGACGTAAAATTTACTGTGAAAGGGTTAAACCTTTTCCTGTCTAGTAGTACAAGGTTGCTCTGTGCACTTGAAGGGAAGTATCTGGTAGATGATATGTGTTATGATTTGATTGATGGTGCTGATGCAGCCATCGGACATCATGAGCTTCAGAATCTCAGTTTCTCTTGTCATATACCAAATATGACTGGAAGAGGGTTTATTGAGGTTGAAGATAATGGTCTCAGCAGCTGTTCCTTTCCATTCATAGTTGCCGAGCCTGAAATTTGTTCCGAGATATGTAATCTGGAGACTGTCATTGAAGCAGCAGAGACTGCTGATGACGTCCAGATTAAAGCCAAATTAATGGAAGAAAAGACTCGAGCAATGAATTTCGTACAAGAAATGGGTTGGCTTCTTCATAGAATTCGTATGAAATTTAGGCTAGGGTCAATGGCACCGGTTCAAGATCCCTTCCATTTTAATCGCTATTCATGGCTTGTCGGCTTCTCTATGGACCACGATTGGTGCGCCGTGATGAAAAAACTCCTGGACATTATCTTTGAGGGTGAAGTTGATACTGGAGAACATACCTCGGCAGAGCTTGCGTTGTTAAACATGGGTCTTCTTCACAAAGCTGTAAAGAGAAATTGTAGGCCTATGGTGGAACTACTGTTAAACTTTGTGCCAGTTAAAGCTTCAGATGGTGGGGACAGTAAAGAGATGCTAGTCAACAAGTCCCCTGAAAGGTTCCTGTTTAGACCTGATACTGTTGGGCCTGCTGGGTTGACTCCCCTTCATGTTGCAGCTAGTATGAATGGCTATGAGAATGTATTGGATGCGTTAACTGATGATCCGGGAATGGTGGGAATTGAGGCATGGAAAAGTGCTAAAGACAACACAGGTTTGACACCAAATGACTATGCATCCCTTAAGGGCCACTACTCCTACATTCAACTTGTGCAGAGGAAAACAAGCAAGAAAAACCAAACTCAACATGTCCTTGACATACCTGGCACCCTTGTAGACGGAAACACGAAGAAACAATCAGATTTGCATAAGTCGTCAAAAGTTTTAAGTTTCCATACAGAGAAGATTGCAACAACATCAATGCCAAATCATTGTGGGCTATGCCAACAGAAGTTGGCCTACAGCGGCAGCGGCGGCATGAGGAGGGCACTTGTTTATAGGCCTGCGATGCTTTCAATGGTTGCAATTGCAGCTGTTTGTGTCTGTGTGGCTTTGCTCTTCAAAAGCTCACCGAGAGTTTACTATGTCTTCCAGCCTTTCAGCTGGGAATCATTGGACTATGGTTCGATATAA 3096 0.4335 MDAKFEGKNKHLYGPVVPELKSGSVGMESSKWDLNDWRWDGDLFTAKQLNSVPTDCRNRQLLPVDPQVSQNVDASNNLVSGERSRELEKRRRDFVGEGLEMNDDIGSLNLNLGGQVYPIMEGEEKSGKKTKIGVTTSNRAVCQVEDCRADLSNAKDYHRRHKVCDVHSKASKALVGNVMQRFCQQCSRFHALEEFDEGKRSCRRRLAGHNKRRRKTHPDGAEVNGGPPNEERGSSYLLMSLLRILSNMHSSGEDHTRNVDVISRLVGNLTSLAGTFNGRNITSLLEGPQDLVKAGTSGAAQNVPNSNTNGAEPPRPIDSRVEMSNGLIHQNPPESRLPCATVPVNHTTQKCIPSNKVGGVGCLKPPLVPHSSNVLPSRGSLPPRPVATETTAGRNGLSNIDLNSVYHDVEDYVENPTNSRPHVALGVGSHDHPSPVQCDSLKSSPPQTSRNSDSTSTQSPSSSSGEGQSRTDRIVFKLFGKDPNDFPLALRSQILSWLSHSPTEIESYIRPGCIILTICLRLENSAWNELCYNLGSSLRKLLAASNDSLWRTGWIYTRVRHSVAILYNGQVVIDLPLRLGSPQNCQILCVKPLAVSASADVKFTVKGLNLFLSSSTRLLCALEGKYLVDDMCYDLIDGADAAIGHHELQNLSFSCHIPNMTGRGFIEVEDNGLSSCSFPFIVAEPEICSEICNLETVIEAAETADDVQIKAKLMEEKTRAMNFVQEMGWLLHRIRMKFRLGSMAPVQDPFHFNRYSWLVGFSMDHDWCAVMKKLLDIIFEGEVDTGEHTSAELALLNMGLLHKAVKRNCRPMVELLLNFVPVKASDGGDSKEMLVNKSPERFLFRPDTVGPAGLTPLHVAASMNGYENVLDALTDDPGMVGIEAWKSAKDNTGLTPNDYASLKGHYSYIQLVQRKTSKKNQTQHVLDIPGTLVDGNTKKQSDLHKSSKVLSFHTEKIATTSMPNHCGLCQQKLAYSGSGGMRRALVYRPAMLSMVAIAAVCVCVALLFKSSPRVYYVFQPFSWESLDYGSI 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02678 1031 MobiDBLite consensus disorder prediction 206 232 - -
Trre4g02678 1031 MobiDBLite consensus disorder prediction 372 399 - -
Trre4g02678 1031 Gene3D - 133 203 IPR036893 GO:0003677|GO:0005634
Trre4g02678 1031 ProSiteProfiles Zinc finger SBP-type profile. 139 216 IPR004333 GO:0003677
Trre4g02678 1031 MobiDBLite consensus disorder prediction 413 469 - -
Trre4g02678 1031 Pfam SBP domain 142 215 IPR004333 GO:0003677
Trre4g02678 1031 SUPERFAMILY SBT domain 140 220 IPR036893 GO:0003677|GO:0005634
Trre4g02678 1031 FunFam Squamosa promoter-binding-like protein 14 133 203 - -
Trre4g02678 1031 MobiDBLite consensus disorder prediction 436 469 - -
Trre4g02678 1031 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 104 855 IPR044817 GO:0003677
Trre4g02678 1031 Gene3D - 782 929 IPR036770 -
Trre4g02678 1031 SUPERFAMILY Ankyrin repeat 797 913 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02678 Trre-Chr4 28379651 28387353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02678 1 1030 SBP-box Gene Family AT3G60030 45.559 0.0 773
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre4g02678 SBP 3.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02678 - - gmx:100792774 1564.67