Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02659 ATGGCCCCTTCCACATTACTCTTCTTCTTCTCCTTCTTTTACCTCTGCTTCTTCTTTAGAAGTATTTCATGTGATATGTTAGATACCACACAGCAAGGAAACTTTCCATCTTGGGTTAAACCAGGGGACAGGAAGCTGCTACAGGCGAGCGAGATGCCTGTGGATGTTGTGGTAGCTTCTGATGGGAGTGGGAACTATACCAAGGTGATGGAGGCTGTGTTAGCAGCACCTGATTATAGCCAGAAACGCTATATAATACACGTTAAGGAAGGAGTTTATAATGAGCATGTTGTGATCAATGTTAACAAGTCAAACCTCATGATGATCGGAGATGGGATGGATGCCACTGTCATCACCGGTGACTTAAGCTCGGGGAGAGATAAGCTGGACACATACTCCACTTTTACTGTTGCTGTTGATGGCCCAGGGTTCATTGCTCGGGACATCACCTTCAGGAACACCGCAGGTCCCGAAAATTTTCAAGCAGTGGCATTATTGTCAAACTCTAACACCTCTGTCGTATACCGCTGTGGAATTTATGGTTTCCAAGACAGTTTATGTGCGAACAAAGGACTCCAATTCTATAAGGACTGCAAAATCAGTGGTTCATTGGACTTCATTTTTGGCTATGCGGCTGCCGTGTTCCAGGACTGCAACATTTTGGTAAGGAAAGGGTTACCAAACCGCCAGAATACCATCACAGCACATGGAGGACCAGCGAGCCCTGACCAACCATTTGGTTTCGCTTTTCAATTTTGTAACATATCCGCCGATTCCGACCTTCTCCCATTTGTTAACATTACCCAAACATTCCTCGGAAGACCGTGGCATCCATACTCACGAGTAGTGTTCATGGAATCCTACATTAGTGACATGTTGAGCCCGGAAGGGTGGTTAGAATGGAATGGGACTCCAGTTAATTTGGAAACGTTATATTACGCCGAGTACAAAAATCATGGACCCGGAGCTGGAGTAGAAAACCGCGTGAAATGGTCAGGGTACCATGTTTTGACTGATCCTAGCCAGGCAAGTAACTTCACTGTGGTGCAATTGATTTTTGGGAATCAATGGTTACCTGCAACTGATGTGCCATTCACCCCTGGACTTGGGAATTAG 1116 0.4561 MAPSTLLFFFSFFYLCFFFRSISCDMLDTTQQGNFPSWVKPGDRKLLQASEMPVDVVVASDGSGNYTKVMEAVLAAPDYSQKRYIIHVKEGVYNEHVVINVNKSNLMMIGDGMDATVITGDLSSGRDKLDTYSTFTVAVDGPGFIARDITFRNTAGPENFQAVALLSNSNTSVVYRCGIYGFQDSLCANKGLQFYKDCKISGSLDFIFGYAAAVFQDCNILVRKGLPNRQNTITAHGGPASPDQPFGFAFQFCNISADSDLLPFVNITQTFLGRPWHPYSRVVFMESYISDMLSPEGWLEWNGTPVNLETLYYAEYKNHGPGAGVENRVKWSGYHVLTDPSQASNFTVVQLIFGNQWLPATDVPFTPGLGN 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02659 371 ProSitePatterns Pectinesterase signature 2. 200 209 IPR033131 -
Trre4g02659 371 Pfam Pectinesterase 55 354 IPR000070 GO:0030599|GO:0042545
Trre4g02659 371 Gene3D - 53 371 IPR012334 -
Trre4g02659 371 SUPERFAMILY Pectin lyase-like 52 368 IPR011050 -
Trre4g02659 371 PANTHER PECTINESTERASE 30 361 - -
Trre4g02659 371 ProSitePatterns Pectinesterase signature 1. 80 99 IPR018040 -
Trre4g02659 371 FunFam Pectinesterase 49 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02659 Trre-Chr4 28063626 28064741 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02659 34 369 Carbohydrate Esterase AT3G43270 58.529 1.16e-140 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02659 K01051 - gmx:100777500 451.055