Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02633 ATGTCCCAGCTAGCTACCAAGGCTAACACTGACCTGATATGTTCTGTGTTCATGCGACATCGTGCTTTCATAAATAACAAGGCATTACATGATACTTTTTCTTCCTTTGGTACTGTGCTTTCTTGTAAGGTAGTTGTGGATAGCAATGGTCAATCAAGGGGATATGGTTTTGTTCAATTGGATAATGATGAGTCTGCAAAGTATTCCATTGAACAATTGGATGGCATGATGATCAATGATAAGAAAGTTTATGTAAGGCATATTATTTGGCGACAAGAAAGGTCGGGAAATGGATCACCTAAGTTCACAAATGTGTATATCAAAAACCTTTCTGAAACATATATCGATGAGGACCTTAAACAACTCCTCAACATTTATAGGGTAATAACAAGTGTTGTGGTCATGAAAGATGAGAATGGAAACTCCAAATGTTTTGGTTTCATGAATTTCCAAAGCCCGGATTCAGCAGCTGTTGCAGTTGAAAGGTTGAATGGGACCGCAACCAATGATGAAAAGGTTTTATTTGTCGGGAGAGCTCAGAGAAAATCGAAAAGGGAGGCAGAATTGAAAACCAAATTTGCGCAAGCAAAGATAAAAACATATGAGAAATCGAAAGTTTGCGCAAATTTGCCATTCAATTCTGCCTCTTTTATTTTCTTTGAGCTCCCGCGACAAATAAAACCTATCCATCATTGGTTATGGTCCCACTCAACCTTTCAACTGCAACAACTGCTGAATCTGGGCTTTGGAAATTCACGAAACCAAAACATTTGGAGTTCCCGTTCTCATCTTTCATGA 798 0.386 MSQLATKANTDLICSVFMRHRAFINNKALHDTFSSFGTVLSCKVVVDSNGQSRGYGFVQLDNDESAKYSIEQLDGMMINDKKVYVRHIIWRQERSGNGSPKFTNVYIKNLSETYIDEDLKQLLNIYRVITSVVVMKDENGNSKCFGFMNFQSPDSAAVAVERLNGTATNDEKVLFVGRAQRKSKREAELKTKFAQAKIKTYEKSKVCANLPFNSASFIFFELPRQIKPIHHWLWSHSTFQLQQLLNLGFGNSRNQNIWSSRSHLS 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02633 265 Gene3D - 22 87 IPR012677 -
Trre4g02633 265 PANTHER RNA BINDING PROTEIN 24 213 - -
Trre4g02633 265 Coils Coil 184 204 - -
Trre4g02633 265 SMART rrm1_1 104 177 IPR000504 GO:0003723
Trre4g02633 265 SMART rrm1_1 15 86 IPR000504 GO:0003723
Trre4g02633 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 181 IPR000504 GO:0003723
Trre4g02633 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 172 IPR000504 GO:0003723
Trre4g02633 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 83 IPR000504 GO:0003723
Trre4g02633 265 SUPERFAMILY RNA-binding domain, RBD 25 173 IPR035979 GO:0003676
Trre4g02633 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 86 IPR000504 GO:0003723
Trre4g02633 265 Gene3D - 96 208 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02633 Trre-Chr4 27735414 27736211 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02633 22 210 Eukaryotic Initiation Factors Gene Family AT1G22760 53.125 1.22e-65 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02633 K13126 - gmx:100783163 254.603