Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02630 ATGGAAGAAAAAAGTTCAACAAAGAAATTTATGGAAGATGATGAAAAGCCATCATATGATCATAGCATTATCGATTCACAAAACAAGACCGATGGACCTTCTTCCTCTCATAACAATACTCAAGGATCTACTCTTTTATTAAGTTTGAGCCTTAATAACACAACACAACTTTCACATCAAATTCAAGCAAAGCCTCAAATCCAAATTGGGAAGCTCCGAGTGAAGCTTGAGGAAGAAAAGAAGGAAAATGAAAATTTGAAAGCAATGTTAAATGTGGTCAACGAGCGATGCATTGTTCTTCAAAATCGTTTACTTGTGGCGATGCATATGCATCAAATATCTTCATTGCCTCAAAATAATAACAACTTGCCGAACACAAATGGACAAGATGCGGAGAAATCAGTGTTACCTACTTGGCAGTTCTTTGACGAACCTTCATCTTCAGATTGTAGCAAAAAAGAAGGATTTGAAAACAATGAAAACAACATGGGAAGAAACTTTGCATGTGAGAACATTAATGAAGGTGAAATAAATAAAAAAGTTGAGGATGAATCACCTGAGGTTGGCTGCAGGAGAGCTAGAGTGTCCATTAGGGCACGATCAGATTTTTCTTTGATGGTGGATGGATGTCAATGGAGAAAGTACGGTCAAAAGACAGCCAAGGGCAACCCTTGTCCACGGGCCTATTATCGTTGTAGTATGGGAACTGCGTGTCCAGTTCGTAAGCAGGTGCAAAGATGTTTCAAAGATGAAAGTGTTTTCATCACAACTTATGAAGGGAACCACAATCATCAACTTCCACAAGCAGCAAGACCAATTGCAAATTTAATATCATCAGCACTAAACACATTTTTTTCAAACTCATCCACAAGTTTACAATATGGCAACAATCTATCAAACACATTTCTCTTCTCTTCACCATTATCTCCACCAAACTCAAATGCTATAGCTACTTTCTCTCCATCTCCAACATGTCCTATAATTACACTTGATTTTACACTCCCTCCAAGTAATTTCTTGCAATTCAAAAATCACAAACAATCATCATTATTCCCTTTTCCATTGCAAGGTTATCCTCAATCATTTGAGGGTTTTCCAAATATGATAAATAATGAGAGAAAACTTGCTTTGGTTGATGTTGTGAGTGAAGCTATAGCAAAAGATCCTTCTCTTAAGGCAACATTATTTGCAGCTATGTCATCATTCACAAATGGAGATCCTTTAAATAGTAATAACCTTAGCCAACCTAGTAAGAGTGGTTAA 1263 0.3674 MEEKSSTKKFMEDDEKPSYDHSIIDSQNKTDGPSSSHNNTQGSTLLLSLSLNNTTQLSHQIQAKPQIQIGKLRVKLEEEKKENENLKAMLNVVNERCIVLQNRLLVAMHMHQISSLPQNNNNLPNTNGQDAEKSVLPTWQFFDEPSSSDCSKKEGFENNENNMGRNFACENINEGEINKKVEDESPEVGCRRARVSIRARSDFSLMVDGCQWRKYGQKTAKGNPCPRAYYRCSMGTACPVRKQVQRCFKDESVFITTYEGNHNHQLPQAARPIANLISSALNTFFSNSSTSLQYGNNLSNTFLFSSPLSPPNSNAIATFSPSPTCPIITLDFTLPPSNFLQFKNHKQSSLFPFPLQGYPQSFEGFPNMINNERKLALVDVVSEAIAKDPSLKATLFAAMSSFTNGDPLNSNNLSQPSKSG 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02630 420 ProSiteProfiles WRKY domain profile. 201 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre4g02630 420 MobiDBLite consensus disorder prediction 1 42 - -
Trre4g02630 420 MobiDBLite consensus disorder prediction 23 42 - -
Trre4g02630 420 MobiDBLite consensus disorder prediction 1 22 - -
Trre4g02630 420 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 62 411 IPR044810 GO:0003700
Trre4g02630 420 SUPERFAMILY WRKY DNA-binding domain 200 267 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre4g02630 420 Pfam WRKY DNA -binding domain 208 265 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre4g02630 420 Coils Coil 69 96 - -
Trre4g02630 420 Gene3D WRKY domain 191 268 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre4g02630 420 SMART WRKY_cls 206 266 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02630 Trre-Chr4 27660963 27665855 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02630 70 333 WRKY Transcription Factor Family AT4G04450 36.825 5.07e-52 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre4g02630 WRKY 1.1e-22 CL0274