Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02618 ATGGAGATTGGTGATAATGAAGTTTGTCTATCCTCACCATCAAAAGGCTTCAATGATTTAGCTAACACAATAGAAGAACGGATTCCTACGTGCGATGACGAATTCAAGCCTGTGATTGGCAATTTATTTGATACTTTAGAAGAAGGAGGAGACTTTTATAAAAGCTATGCACACACAGCTGGTTTTAGTGTACGTAACTCATCTGAAACAAAAGATAAATATGGTGTGAAATGGAAATATTTTCTTTGCTCAAAAGAGGGTTTCAAAATAGAGAAAAATGTTGTCTTGCCCGAATTGATTATTAGTGAAAATAGTTTACCTAAAAGTAGAAAAAGAAAACTAACAAGGGAGGGATGTAATGCAAAGATTGCATTCAAGAGAACAATAGATGGTAAATATGAAATTGCAAAATTTTATGAAGGTCATACACATGTGTAG 438 0.3356 MEIGDNEVCLSSPSKGFNDLANTIEERIPTCDDEFKPVIGNLFDTLEEGGDFYKSYAHTAGFSVRNSSETKDKYGVKWKYFLCSKEGFKIEKNVVLPELIISENSLPKSRKRKLTREGCNAKIAFKRTIDGKYEIAKFYEGHTHV 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02618 145 Pfam FAR1 DNA-binding domain 51 144 IPR004330 -
Trre4g02618 145 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 19 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02618 Trre-Chr4 27477095 27477532 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre4g02618 FAR1 2.3e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02618 - - mtr:120577464 187.578