Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02598 ATGGATGGTGTCACTGTCAAGGTTGAGCCAGAGCAGTTTACAGTTCTAGAATCTTCTCCTGTTGCTATTGAGAATCATGTTGATTGTGTTGATGGTGTTAGTTCCAACATGGGTGATGGATCAATGATGAATTCCTCAGCAAACAAGTCCATGCCAGCATCTGGAATGAATGCAGCGGCTCCTAATACAAGTCAGCTTACCATCTTCTATAATGGGAGCATTTGTATCTATGATGGAATACCTGCAGAAAAGGTGCAGGAAATAATGCTCATGGCTGCTGCTGCTGCCAAGTCTACTGAAACGAAAAAGATTGTGAAACAATCTCCTGTCCCTTCACCTGCTCCAACAAGGCCTTCTTCTCCACATGGAACCACTGATAATATTGCTTCACAGCAGGGACTCTGCTATCCTGCAAAGAAGAGTTCCATCTGCCGTCTGCAAGAATTTCCAATAGCACGCAGGCATTCACTTCAAATGTTTCTTCAGAAGCGGCGAGACAGGTTGGGTAGTAAAGCACCTTATCCTTCCTCCCCAACAACAAAGGTGGCTGACAACATAGAGAACAACTTCTGTTCTGAGAATTCGCCAGATTCAGTTTCAATGAAGGGACCAAAGGAGGAATTTCAGCCTACTATATTTACCTCTTGA 648 0.4414 MDGVTVKVEPEQFTVLESSPVAIENHVDCVDGVSSNMGDGSMMNSSANKSMPASGMNAAAPNTSQLTIFYNGSICIYDGIPAEKVQEIMLMAAAAAKSTETKKIVKQSPVPSPAPTRPSSPHGTTDNIASQQGLCYPAKKSSICRLQEFPIARRHSLQMFLQKRRDRLGSKAPYPSSPTTKVADNIENNFCSENSPDSVSMKGPKEEFQPTIFTS 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02598 215 MobiDBLite consensus disorder prediction 100 129 - -
Trre4g02598 215 Pfam tify domain 61 93 IPR010399 -
Trre4g02598 215 MobiDBLite consensus disorder prediction 168 215 - -
Trre4g02598 215 SMART tify_2 59 94 IPR010399 -
Trre4g02598 215 Pfam Jas motif 150 174 IPR018467 -
Trre4g02598 215 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 44 183 IPR040390 -
Trre4g02598 215 ProSiteProfiles Tify domain profile. 59 94 IPR010399 -
Trre4g02598 215 MobiDBLite consensus disorder prediction 173 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02598 Trre-Chr4 27154348 27159125 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02598 31 177 Tify Gene Family AT5G20900 44.667 7.44e-32 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Trre4g02598 tify 3.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02598 K13464 - gmx:100306045 247.669