Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02591 ATGGCTCTTTTAAAAACACAAAAGTTACAATTATCTCAAACAAAACCAATACCAACTCTCATCACATTAACATTCATTTTAACAAGTTTGTTATGCAGTTCAGTACTGTGTGCTAGTGCTAGCTCTCCCACAGCAACCTCTGCTGGATTTGAGTTTCTTAATGTTGCTCCATCTGAATTTGTTGGGTCAGTGAAAGATGTAATTGAAATTTTGCAAGATGTTACTTCAATTCTTTCAGAATTTGGTGGTAGTGGGTTTGGTGATTCACGTCTGTCTAATGCTGTTTCTGATTGCCTTGAAATGCTTGACCTTTCCTCTGATGCACTTACTTGGTCTGTTGATGCTACTCAGACACCCAAAGGTAAGCATAATAGTACTGGGAATGTGAGCTCTGATGTAAGAACATGGTTAAGTGCTGCACTTGCAAATCCAGAGACATGCATGGATGGATTTGAAGGTACCAATGGCATTGAAAGTCAATTAATAGCCACTGGCCTAAGCCAAATGATGTCATTGCTAAAAGATCTTCTCACACAAGTTGACCCTAAATTCGATAACTTCGCGCAAAAAGGTCAATTTCCATCGTGGGTTAAACGAGAGGATAGAAAGCTCTTGCAGTTAAATGGCGTGGGTGCGGATGTGGTCGTTGCTCTCGATGGGAGCGGTAATTTTACAAAGGTTATGGATGCGGTGCACGCAGCTCCCGATTATAGCATGAAACGTTATGTGATACACATAAAAAGAGGTGTTTATGTTGAAAATGTTGAAATCAAGAAGAAGAAATGGAACCTCATGATAGTTGGCGATGGTATGGATACCACCATTATCTCGGGTAATCGGAGCTTCATCGGTGGATGGACCACATTCAGATCAGCTACCTTTGCTGTTAGTGGTAGAGGATTCATAGCACGAGACATCACTTTTAAGAACACTGCAGGTCCTGAGAAGCACCAAGCAGTGGCACTAAGATCCGACTCTGACCTCTCTGTATTTTATCGATGTGGAATTTCCGGTTATCAGGACAGTCTTTATACTCACACCATGCGTCAATTCTATAGAGAATGCAAAATAAGTGGCACCGTAGATTTCATCTTTGGAGATGCCACAACTCTTTTCCAAAATTGTCAAATTCTAGTTAAGAAAGGGTTACCAAATCAAAAGAACACCATCACAGCTCATGGAAGAAAAGACCCGAATGAACCAACTGGTTTCTCAATTCAATTCTGCAACATTACAGCAGATTCTGACCTTCTATCTTCGGTTAATTCCACCTGGACATATCTTGGAAGACCGTGGAAACAATATTCGAGAACTATTTTTATGCAATCGTACATAAGCAATGTGTTGAGACCGGAAGGGTGGCTAGAATGGAATGGAGATTTTGCATTGGATACATTGTACTATGCAGAGTACCGAAATTATGGTCCAGGAGCTGGGCTAAGTAAACGAGTTAAATGGCCGGGATATCACATTATGAATGATTCTAGTCAAGCTAGTAACTTCACGGTGACCCAATTTATCGAGGGGAATCTATGGTTGCCCACAACAGGTGTAGCATTCACTGCTGGATTAGGAGTTTGA 1581 0.4105 MALLKTQKLQLSQTKPIPTLITLTFILTSLLCSSVLCASASSPTATSAGFEFLNVAPSEFVGSVKDVIEILQDVTSILSEFGGSGFGDSRLSNAVSDCLEMLDLSSDALTWSVDATQTPKGKHNSTGNVSSDVRTWLSAALANPETCMDGFEGTNGIESQLIATGLSQMMSLLKDLLTQVDPKFDNFAQKGQFPSWVKREDRKLLQLNGVGADVVVALDGSGNFTKVMDAVHAAPDYSMKRYVIHIKRGVYVENVEIKKKKWNLMIVGDGMDTTIISGNRSFIGGWTTFRSATFAVSGRGFIARDITFKNTAGPEKHQAVALRSDSDLSVFYRCGISGYQDSLYTHTMRQFYRECKISGTVDFIFGDATTLFQNCQILVKKGLPNQKNTITAHGRKDPNEPTGFSIQFCNITADSDLLSSVNSTWTYLGRPWKQYSRTIFMQSYISNVLRPEGWLEWNGDFALDTLYYAEYRNYGPGAGLSKRVKWPGYHIMNDSSQASNFTVTQFIEGNLWLPTTGVAFTAGLGV 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02591 526 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 64 163 IPR035513 -
Trre4g02591 526 ProSitePatterns Pectinesterase signature 1. 238 257 IPR018040 -
Trre4g02591 526 PANTHER PECTINESTERASE 63 515 - -
Trre4g02591 526 ProSitePatterns Pectinesterase signature 2. 357 366 IPR033131 -
Trre4g02591 526 SUPERFAMILY Pectin lyase-like 210 523 IPR011050 -
Trre4g02591 526 SMART PMEI_2 21 179 IPR006501 GO:0004857
Trre4g02591 526 Pfam Pectinesterase 213 510 IPR000070 GO:0030599|GO:0042545
Trre4g02591 526 FunFam Pectinesterase 208 524 - -
Trre4g02591 526 NCBIfam pectinesterase inhibitor domain 65 161 IPR006501 GO:0004857
Trre4g02591 526 Gene3D - 210 526 IPR012334 -
Trre4g02591 526 Gene3D Invertase/pectin methylesterase inhibitor family protein 26 181 IPR035513 -
Trre4g02591 526 Pfam Plant invertase/pectin methylesterase inhibitor 31 166 IPR006501 GO:0004857
Trre4g02591 526 CDD PMEI-like_4 20 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02591 Trre-Chr4 27014332 27023632 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02591 11 524 Carbohydrate Esterase AT3G43270 60.681 0.0 678
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02591 K01051 - gmx:100777500 798.505