Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02585 ATGGCTTCTTCATCTCACAAACTCTCCCTCCTTCTTTTTACAATCATTTTGTCACTTACTTTACCTATCACCACAAACTCATCCACAACCACAACATTAAATCTCAATTTTTCTTCCTTAAAATCTTTATGCAAAACAACACCATACCCAAAACTTTGTTTCAATTCACTAAAACTATCTATATCAATAAACATTAATCCAAACATCTTAACTTATCTCCTTCAATCACTTCAACTAGCAATATCCGAAACCACGAAGCTCTCTAATCTTTTCCACGACGTAGGAAACACGAACATCGTAGAGAAACAACGAGGATCAATTCAAGATTGCAAGGAGCTTCATCAATCAACATTAACTTCATTGAAAAGATCATTATCCGGAATTCGTTCATCGAACAAAAGAAAATTAGCTGATGCAAGAATCTACCTTAGTGCAGCAGTTACAAACAAAAACACATGTTTAGAAGGACTTGATTCTGCTTCTGGTAACCTTAAACAAGTTCTTGTGGATTCTGTTATTAACACTTACAAACATGTAAGTAATTCACTTTCTATGCTTTCTAATCATGGAACTGAGACTTCAAATCAAAAGGGTCACAAGAAAAAACAGGTTTCTCGAAAATGGTTGTCGAAAAGCTTAGATTTTGATGAATATGATCCAAATGAATTGCTTGTTGTGGCTACAGATGGAACAGGGAACTTTAGCACAATCACTGATGCAATTAACTTTGCTCCAAATAATAGCATGATTAGGACAGTGATTTATGTTAAAGAAGGGATTTATGATGAAAATGTTGAAATACCAAGTTATAAAACTAACATTGTGATGCTTGGTGATGGAAGTGATTCTACTGTCATCACTGGTAACAGAAGTGTTGTTGATGGATGGACCACTTTCAGATCTGCAACATTAGCTGTATCTGGTGATGGTTTTCTTGCAAGAGACATAGCATTTGAGAACAGAGCAGGGCCAGAGAAGCATCAAGCAGTTGCATTAAGAGTAAATGCAGATTTAACAGCATTTTACAAATGTGCAATTTATGTAGTTTTACAAGAATGTGACATTGTTTCCAGAATGCCATTACCTGGTCAATTCACTGTTATAACCGCACAATCGCGAGATAACCCTGATGAAGATACAGGAATATCAATCCAAAACTGTTCAATTATCGCTACGGATGAACTTTATTCAAACTCTAGTAGATTCAAGAGTTACCTTGGAAGGCCATGGAGGGTATTTTCTAGAACTGTTTTCATTGAATCTTATATAGATGATTTTATTGATCAAAAGGGTTGGACAAAATGGTCTAATGATGAAGGTTTGGATACTTTGTTTTATGGCGAGTACGAAAATTATGGACCTGGTTCAAAGATTGATAATCGCGTTGAATGGGCCGGTTATCATTTGATGGATTATAACGATGCGTATAATTTCACTGTTTCTGAGTTTATTATTGGTGATGAATGGCTTGAGTCTGCTTCAGTTCCTTATGATGATGGGATTTGA 1506 0.3546 MASSSHKLSLLLFTIILSLTLPITTNSSTTTTLNLNFSSLKSLCKTTPYPKLCFNSLKLSISININPNILTYLLQSLQLAISETTKLSNLFHDVGNTNIVEKQRGSIQDCKELHQSTLTSLKRSLSGIRSSNKRKLADARIYLSAAVTNKNTCLEGLDSASGNLKQVLVDSVINTYKHVSNSLSMLSNHGTETSNQKGHKKKQVSRKWLSKSLDFDEYDPNELLVVATDGTGNFSTITDAINFAPNNSMIRTVIYVKEGIYDENVEIPSYKTNIVMLGDGSDSTVITGNRSVVDGWTTFRSATLAVSGDGFLARDIAFENRAGPEKHQAVALRVNADLTAFYKCAIYVVLQECDIVSRMPLPGQFTVITAQSRDNPDEDTGISIQNCSIIATDELYSNSSRFKSYLGRPWRVFSRTVFIESYIDDFIDQKGWTKWSNDEGLDTLFYGEYENYGPGSKIDNRVEWAGYHLMDYNDAYNFTVSEFIIGDEWLESASVPYDDGI 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02585 501 Pfam Plant invertase/pectin methylesterase inhibitor 39 185 IPR006501 GO:0004857
Trre4g02585 501 SUPERFAMILY Pectin lyase-like 222 498 IPR011050 -
Trre4g02585 501 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 188 IPR035513 -
Trre4g02585 501 FunFam Pectinesterase 36 188 - -
Trre4g02585 501 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 187 IPR035513 -
Trre4g02585 501 PANTHER PECTINESTERASE 16 346 - -
Trre4g02585 501 Gene3D - 348 501 IPR012334 -
Trre4g02585 501 SMART PMEI_2 35 185 IPR006501 GO:0004857
Trre4g02585 501 Pfam Pectinesterase 224 346 IPR000070 GO:0030599|GO:0042545
Trre4g02585 501 Pfam Pectinesterase 348 487 IPR000070 GO:0030599|GO:0042545
Trre4g02585 501 CDD PMEI-like_3 42 188 - -
Trre4g02585 501 ProSitePatterns Pectinesterase signature 1. 248 267 IPR018040 -
Trre4g02585 501 Gene3D - 220 347 IPR012334 -
Trre4g02585 501 NCBIfam pectinesterase inhibitor domain 9 189 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02585 Trre-Chr4 26897593 26900532 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02585 22 501 Carbohydrate Esterase AT2G26440 58.412 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02585 - - psat:127136348 804.283