Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02584 ATGGCTTCTTCATCTCACAAACTCTCCCTCCTTCTTTTTACAATCATTTTGTCACTTACTTTACCTATCACCACAAACTCATCCACAACCACAACATTAAATCTCAATTTTTCTTCCTTAAAATCTTTATGCAAAACAACACCATACCCAAAACTTTGTTTCAATTCACTAAAACTATCTATATCAATAAACATTAATCCAAACATCTTAACTTATCTCCTTCAATCACTTCAACTAGCAATATCCGAAACCACGAAGCTCTCTAATCTTTTCCACGACGTAGGAAACACGAACATCGTAGAGAAACAACGAGGATCAATTCAAGATTGCAAGGAGCTTCATCAATCAACATTAACTTCATTGAAAAGATCATTATCCGGAATTCGTTCATCGAACAAAAGAAAATTAGCTGATGCAAGAATCTACCTTAGTGCAGCAGTTACAAACAAAAACACATGTTTAGAAGGACTTGATTCTGCTTCTGGTAACCTTAAACAAGTTCTTGTGGATTCTGTTATTAACACTTACAAACATGTAAGTAATTCACTTTCTATGCTTTCTAATCATGGAACTGAGACTTCAAATCAAAAGGGTCACAAGAAAAAACAGGTTTCTCGAAAATGGTTGTCGAAAAGCTTAGATTTTGATGAATATGATCCAAATGAATTGCTTGTTGTGGCTACAGATGGAACAGGGAACTTTAGCACAATCACTGATGCAATTAACTTTGCTCCAAATAATAGCATGATTAGGACAGTGATTTATGTTAAAGAAGGGATTTATGATGAAAATGTTGAAATACCAAGTTATAAAACTAACATTGTGATGCTTGGTGATGGAAGTGATTCTACTGTCATCACTGGTAACAGAAGTGTTGTTGATGGATGGACCACTTTCAGATCTGCAACATTAGCTGTATCTGGTGATGGTTTTCTTGCAAGAGACATAGCATTTGAGAACAGAGCAGGGCCAGAGAAGCATCAAGCAGTTGCATTAAGAGTAAATGCAGATTTAACAGCATTTTACAAATGTGCAATTTATGGTTACCAAGACACACTTTATGTTCACTCATTTAGACAATTTTATAGAGAATGCGACATTTACGGTACCATAGATTTCATATTTGGTAACGCGGCAGTAGTTTTACAAGAATGTGACATTGTTTCAAGAATGCCATTACCTGGTCAATTCACTGTTATAACCGCACAATCGCGAGATAACCCCGATGAAGATACAGGTATATCAATCCAAAACTGTTCAATTATCGCTACGGATGAACTTTATTCAAACTCTAGTAGATTCAAGAGTTACCTTGGAAGGCCATGGAGGGTATTTTCTAGAACTGTTTTCATTGAATCTTATATAGATGATTTTATTGATCAAAAGGGTTGGACAAAATGGTCTAATGATGAAGGTTTGGATACTTTGTTTTATGGCGAGTACGAAAATTATGGACCTGGTTCAAAGATTGATAATCGCGTTGAATGGGCCGGTTATCATTTGATGGATTATAACGATGCGTATAATTTCACTGTTTCTGAGTTTATTATTGGTGATGAATGGCTTGAGTCCTCTTCAGTTCCTTATGATGATGGGATTTGA 1602 0.3552 MASSSHKLSLLLFTIILSLTLPITTNSSTTTTLNLNFSSLKSLCKTTPYPKLCFNSLKLSISININPNILTYLLQSLQLAISETTKLSNLFHDVGNTNIVEKQRGSIQDCKELHQSTLTSLKRSLSGIRSSNKRKLADARIYLSAAVTNKNTCLEGLDSASGNLKQVLVDSVINTYKHVSNSLSMLSNHGTETSNQKGHKKKQVSRKWLSKSLDFDEYDPNELLVVATDGTGNFSTITDAINFAPNNSMIRTVIYVKEGIYDENVEIPSYKTNIVMLGDGSDSTVITGNRSVVDGWTTFRSATLAVSGDGFLARDIAFENRAGPEKHQAVALRVNADLTAFYKCAIYGYQDTLYVHSFRQFYRECDIYGTIDFIFGNAAVVLQECDIVSRMPLPGQFTVITAQSRDNPDEDTGISIQNCSIIATDELYSNSSRFKSYLGRPWRVFSRTVFIESYIDDFIDQKGWTKWSNDEGLDTLFYGEYENYGPGSKIDNRVEWAGYHLMDYNDAYNFTVSEFIIGDEWLESSSVPYDDGI 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02584 533 Gene3D - 220 533 IPR012334 -
Trre4g02584 533 NCBIfam pectinesterase inhibitor domain 9 189 IPR006501 GO:0004857
Trre4g02584 533 PANTHER PECTINESTERASE 16 523 - -
Trre4g02584 533 Pfam Plant invertase/pectin methylesterase inhibitor 39 185 IPR006501 GO:0004857
Trre4g02584 533 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 187 IPR035513 -
Trre4g02584 533 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 188 IPR035513 -
Trre4g02584 533 SMART PMEI_2 35 185 IPR006501 GO:0004857
Trre4g02584 533 FunFam Pectinesterase 218 533 - -
Trre4g02584 533 SUPERFAMILY Pectin lyase-like 222 530 IPR011050 -
Trre4g02584 533 ProSitePatterns Pectinesterase signature 2. 367 376 IPR033131 -
Trre4g02584 533 CDD PMEI-like_3 42 188 - -
Trre4g02584 533 FunFam Pectinesterase 36 188 - -
Trre4g02584 533 ProSitePatterns Pectinesterase signature 1. 248 267 IPR018040 -
Trre4g02584 533 Pfam Pectinesterase 224 519 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02584 Trre-Chr4 26884227 26886726 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02584 32 533 Carbohydrate Esterase AT2G26440 64.933 0.0 685
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02584 - - psat:127136348 889.797