Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02583 ATGGCTTCCGAATCCTCTAGCATCTCTGTCACATCACAAGATCAAGGTGATTCCAACTCAAAAAAAGTGGTGGTCACGAAAGAGATCAAACAAGATCAATCATCAAACTCAAATTCAAAAAATCCTGTTGATTTCGTGAAGCTATCGAAAGACGATTTAGTTCCTATGTCGAATGTGCAAGAGCACAATTTCTTTAGTCCTATTCAAGTTGGTTCATCATCTTACTTTCCTATTAGCAACAATGAAAGGAAAGATGAGAACGAGAATGAAGAAAAAAATTCGGATTCAAGATCTTTTTCGTGCTCTTTTTGCAAGAGACAATTTTCTACTTCACAAGCATTAGGAGGACACCAGAACGCTCATAAGGCGGAACGTGCCTTAGAAAAACAACGTAAACAAAGGGCACTAGGGACTAGAATGGAGTCCATGATTCAAAAACCGCATCCTAGGTTTACCCCACAAAGTATTGGGTATAGTCACGGTGCTTTGTGTTTGCAAGAGATATTAAACCCTTCTCTTGTGTCATTGAGAAATATGGGGGGCGGTAATAGCGGGATTGGAAATCTAAGCATTGGTGGTGCAACTACTTTAAAGATTGAAGATAGTTCAAAAAATAAATTAAAGATTGAAGATGGTGCAAAAAGTAAAATCAGTGATATTCTAAATTTTGGAGAGTCTTCTACAAATATTGCTACAAGTTCAACCTCAAACATAGAGAAGAAAAATAGTGTGGCTCTTACTTCTACTAAGGATGATATTCTTCGATCAAAGTCCAACATTGATGAAGAAACCTCCAATAATTCTGATGAATCATCTGGACTTGATTTGTCACTTAAGCTTTAA 843 0.3689 MASESSSISVTSQDQGDSNSKKVVVTKEIKQDQSSNSNSKNPVDFVKLSKDDLVPMSNVQEHNFFSPIQVGSSSYFPISNNERKDENENEEKNSDSRSFSCSFCKRQFSTSQALGGHQNAHKAERALEKQRKQRALGTRMESMIQKPHPRFTPQSIGYSHGALCLQEILNPSLVSLRNMGGGNSGIGNLSIGGATTLKIEDSSKNKLKIEDGAKSKISDILNFGESSTNIATSSTSNIEKKNSVALTSTKDDILRSKSNIDEETSNNSDESSGLDLSLKL 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02583 280 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Trre4g02583 280 MobiDBLite consensus disorder prediction 29 44 - -
Trre4g02583 280 MobiDBLite consensus disorder prediction 1 20 - -
Trre4g02583 280 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 126 IPR013087 -
Trre4g02583 280 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 2 280 IPR044246 GO:0009788
Trre4g02583 280 MobiDBLite consensus disorder prediction 81 95 - -
Trre4g02583 280 MobiDBLite consensus disorder prediction 76 97 - -
Trre4g02583 280 Pfam C2H2-type zinc finger 99 123 - -
Trre4g02583 280 Gene3D Classic Zinc Finger 79 149 - -
Trre4g02583 280 MobiDBLite consensus disorder prediction 1 44 - -
Trre4g02583 280 MobiDBLite consensus disorder prediction 255 280 - -
Trre4g02583 280 SUPERFAMILY beta-beta-alpha zinc fingers 96 127 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02583 Trre-Chr4 26853572 26854504 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02583 87 133 C2H2 Transcription Factor Family AT5G01860 62.500 2.73e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02583 - - tpra:123915384 419.083