Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02582 ATGGCGTTCCAAGATTTTGATCTTGTATCAGAAAGGCGAAAAACTAATGCTGCACAACACCTTAGAAAAAAGATTTTGGTCGGTGTAACTTCCGCCCTTCTAATAGCATGTGTTATAGCAGCAGCAGCATTCGTTATTGTCAAACAAACCGGAAGAAATGAAGTGAAGGCAGATCCAAAAGCAAAGCCAGAAGCCGCGCATGTCGATCAAACATCGAGGCTTGTGAAAGTGTTGTGCAGTAATTCAGAATACAAGGCAAAATGTGAAACCACACTTACCGAGGCATTGAAAAAAGATCCCAAATTGACAGAACCAAAGGATCTTCTAATGGTTTCCATGGTAATCGCCGAGAATGAAGTTAACAAGGCATTCAACGAAACTGAGAAAATGAAATTCGCTTCCGAGGAAGAAAAGGGAGCTTACGAAGATTGTAAACAGTTGTTCGCTGATGCTAAAGAAGAAATGGGATTCTCAATCAATGAAGTTGGTCAAGTTGATGTTTCCAAACTATCTTCAAAAACCGGTGAAGTGAATAATTGGCTTAGTGCTGTTATGTCTTACCAACAAACTTGTCTTGATGGTTTCCCCGAAGGCGAATTTAAGAAAAAATTGGAGAAGATGTTCACTGAATCAAGGCAACTTGTTAGCAATTCAATGGCAATTGTTTCACAAGTTTCTCAAATTGTTAATGCATTCCAAGGCGGAATTTCTGGATTCAAATTACCTTGGGGTAAAACTGAGGCACCAACACACGCTCCCGTTGCTGGTGCTAATGTCAATGTTGCCGGTGCTCCTGCTGGTTCTCCTGGTGCTGCACCTATTGGTGCTCCCGGTGCTGATCCTATTTTCCTCGCTCCAGCCGGTTCTCCTGGTGCTGCACCTGTTGGTGCTCCCGGTGTTGATTCAGTTGCTGCCGATGCTCCTGCTTGGGCTTCACCTGTTCTTGAATTGCCTGGATCAACTGAGAAACCTACTCCTAATGTCACTGTTGTTCAAGATGGTAGTGGAGACTTCAAAACCATCTCCGACGCTTTGGCTGCTATTCCAGCCAAATACGAAGGAAGGTATGTTGTGTATGTTAAGGAAGGAGTGTACGATGAGTTGGTTACAGTGACAAAGAAAATGGTGAACCTTACCATGTATGGTGATGGTGGATTAAAGAGTATCATCACCGGCAACAAGAATTTCGTCGATGGAGTCAGAACTTTCCAAACTGCGTCCTTCGTGGTACTTGGAGATGGATTCTTGGGGAGAGACATGGGATTCAGAAACACAGCCGGTGCCATCAAGCATCAAGCCGTGGCCGCCAGAGTCCAAGCAGATCGTGCCATATTTGTCAACTGCAACTTTGAAGGTTACCAAGACACATTGTACGCACAAACACACAGACAATTCTACCGCGACTGTGTCATTTCTGGCACAATCGATTTCATCTTTGGTGATGCATCCGCAGTCTTCCAAAATTGCCAAATGGTTATTAGAAAGCCACTTGACAACCAACAAAACATCGTCACCGCACAAGGAAGGCTTGACAAACAAGAAACTACCGGATTCGTCCTACAAAAATGTGTCTTCAAGGGCGAAGATGGCCTTCCCCCAACAACCAAGAATTACCTCGGAAGACCATGGAAGGAATATTCAAGGACAATTATCATGGAATCCGACATTGGCGGTTTGATTCATCCCGATGGTTGGTTACCTTGGGAAGGTGATTTTGCATTAACCACATTGTATTATGGTGAGTTTAACAATGTTGGTGCTGGTGCTAATACTGATGCAAGAGTTAAATGGATTGGACGCAAAGTAATCAATAGGGATGAGGCTATTACTTATACCGTTGAACCTTTCTTGCAAGGAACATGGATCAATGGTACAGGTGTTCCAGCTCAATTAGGCTTATACAACTAA 1908 0.4361 MAFQDFDLVSERRKTNAAQHLRKKILVGVTSALLIACVIAAAAFVIVKQTGRNEVKADPKAKPEAAHVDQTSRLVKVLCSNSEYKAKCETTLTEALKKDPKLTEPKDLLMVSMVIAENEVNKAFNETEKMKFASEEEKGAYEDCKQLFADAKEEMGFSINEVGQVDVSKLSSKTGEVNNWLSAVMSYQQTCLDGFPEGEFKKKLEKMFTESRQLVSNSMAIVSQVSQIVNAFQGGISGFKLPWGKTEAPTHAPVAGANVNVAGAPAGSPGAAPIGAPGADPIFLAPAGSPGAAPVGAPGVDSVAADAPAWASPVLELPGSTEKPTPNVTVVQDGSGDFKTISDALAAIPAKYEGRYVVYVKEGVYDELVTVTKKMVNLTMYGDGGLKSIITGNKNFVDGVRTFQTASFVVLGDGFLGRDMGFRNTAGAIKHQAVAARVQADRAIFVNCNFEGYQDTLYAQTHRQFYRDCVISGTIDFIFGDASAVFQNCQMVIRKPLDNQQNIVTAQGRLDKQETTGFVLQKCVFKGEDGLPPTTKNYLGRPWKEYSRTIIMESDIGGLIHPDGWLPWEGDFALTTLYYGEFNNVGAGANTDARVKWIGRKVINRDEAITYTVEPFLQGTWINGTGVPAQLGLYN 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02582 635 Pfam Plant invertase/pectin methylesterase inhibitor 74 221 IPR006501 GO:0004857
Trre4g02582 635 Pfam Pectinesterase 327 619 IPR000070 GO:0030599|GO:0042545
Trre4g02582 635 FunFam Pectinesterase 321 633 - -
Trre4g02582 635 NCBIfam pectinesterase inhibitor domain 68 225 IPR006501 GO:0004857
Trre4g02582 635 Gene3D Invertase/pectin methylesterase inhibitor family protein 71 226 IPR035513 -
Trre4g02582 635 PANTHER PECTINESTERASE 38 623 - -
Trre4g02582 635 SUPERFAMILY Pectin lyase-like 324 628 IPR011050 -
Trre4g02582 635 CDD PMEI-like_3 78 226 - -
Trre4g02582 635 Gene3D - 321 633 IPR012334 -
Trre4g02582 635 ProSitePatterns Pectinesterase signature 2. 471 480 IPR033131 -
Trre4g02582 635 FunFam Pectinesterase 71 226 - -
Trre4g02582 635 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 74 225 IPR035513 -
Trre4g02582 635 SMART PMEI_2 70 221 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02582 Trre-Chr4 26831361 26834168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02582 1 635 Carbohydrate Esterase AT2G26450 40.976 6.43e-164 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02582 - - gmx:100807628 819.69