Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02568 ATGGCAAACACAAATTCTCCATCAAACAACTCTTCCTCACACAACCTTCTCATAACCATAACCGTTTTCACCGTTACCGTCACAGTTTTCTTAACTCTCTACCTCATTCTCCGTTACCGTTGCAATTGCCTCCGTCGCCGTTTCTCTCCGTCATCCTCCACAGTTTTCTCCTCCCCTTCGGGAAATCGAGTTTCACCGGAAACGACGACTTCATCTTCCGTCGTCGATTCTCTCCCGCTATTCACATTCTCTTCCATCACACGCCGTTCTTCCTCCGTCGTCTCACGCGACTGCGCCGTTTGTTTGTCGAAATTTGAGCAAACCGACCTCCTCCGTCTCCTCCCTCTCTGCTGTCACGCCTTCCACACCGAATGCATTGACGCTTGGCTCCGTTCGAATCTCACGTGTCCGCTTTGCCGATCAGCCGTCGTCGTTTCGGAGTCCGAGCTTACGAAGATTTTCCGGCCGTCTTCCGCGTCTTCCGGAAACAGCTTCCGTTTGGAGATAGGAAACATCAGTAACCGCCGTGGAGCCGGAACCGCCGCAACTGACAATGTCAGTGGAGAAACTGATCGGAGATCGTACTCCGTCGGTGCGTTTGAGTATTTCGTTGACGAGGAAGCTGAGATTCCATTTGGCAACACTAATCGGAGAATTTTTTCCGGCGAGAAAGATGATTCACCGGCGGTGGGGGTTCCGGTAGTTTCTCAAGCGAGTTTGGTTGGTGAAGGTAGCTGGTTGAAGGATTATGTTGATAATCTTTCGAATTTGGTTTCATTCGGAGGTTCTGGAAGGTTCTTTACTGGAAGCAGTAGACAAAACGACGTCGTTAGTGATATTGAAGTTCAAAATAATAATGGTTTTGGGGAAGAAATTAGCGAGATGTTTAGATGGATTTCAGGAGTTTGA 909 0.4884 MANTNSPSNNSSSHNLLITITVFTVTVTVFLTLYLILRYRCNCLRRRFSPSSSTVFSSPSGNRVSPETTTSSSVVDSLPLFTFSSITRRSSSVVSRDCAVCLSKFEQTDLLRLLPLCCHAFHTECIDAWLRSNLTCPLCRSAVVVSESELTKIFRPSSASSGNSFRLEIGNISNRRGAGTAATDNVSGETDRRSYSVGAFEYFVDEEAEIPFGNTNRRIFSGEKDDSPAVGVPVVSQASLVGEGSWLKDYVDNLSNLVSFGGSGRFFTGSSRQNDVVSDIEVQNNNGFGEEISEMFRWISGV 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02568 302 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 145 IPR013083 -
Trre4g02568 302 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 11 210 - -
Trre4g02568 302 SMART ring_2 98 139 IPR001841 -
Trre4g02568 302 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
Trre4g02568 302 SUPERFAMILY RING/U-box 75 146 - -
Trre4g02568 302 CDD RING-H2_EL5-like 97 140 - -
Trre4g02568 302 FunFam E3 ubiquitin-protein ligase ATL6 61 146 - -
Trre4g02568 302 MobiDBLite consensus disorder prediction 49 71 - -
Trre4g02568 302 Pfam Ring finger domain 97 140 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02568 Trre-Chr4 26693257 26694165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02568 73 153 C3H Transcription Factor Family AT3G18930 50.000 5.62e-22 93.2