Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02566 ATGTTGCAATTTCAGGGTGTTTCAAGACATTGTAGTCTCCTTGCTGTTCTTAGTGGTAAATCACATGACAGTAAACAAAAACAGAAGCAGAAGCAGAAGCAAGATGATGTTTCTGAGGGTCAATTTTCATCATACCCCTTTCCCGAGCTTTCTTCGTCCGGGCATCTCGAGGTTAAAGTATTGATTAAACCTACTTACGATGAACTTGGTCGAGTTCTAGAACAACTGCAGCCGGATTTTGTTTACCTGCAAGGTCAGCAGCTAGATGATAGGGGAGAAATTGGGTCTCTTGTATGGGAAGATTTTGACTTGTCTACCCCAGAAGCCTTGTGTGGATTATTTTCTTCCAAATTACCTAATACTGTTTATTTGGAAACTCCCAAGGGTGAAAAATTGGCCGAGGCACTCCATTCCGAGGGAGTACCTTACACTATATACTGGAAAAATGATTTTTCAAAGTATGCAGCTTCACATTTTCATCAAGCATTTTTCTCAGTGGCACAAAGTACATCCAGCCATACATGGGATGCTTTCCAACTTGCTCAAGCATCTTTTAGACTATACTGTGCGCAAAACAATGTCGTATCGCATAACAGCGGGAAGGGCGGCGGTAAGCTTGGGCCGCAAATTCTTGGGGAACCTCCTAACATAGAAGTTGGTCCATGTGAAGCAAACACGAAGGAAGAAGAAGAAGATTCACCTGAGACTAGTTCTTCTATAAAGATATATGATGATGATGTGATTACGAGATTTCTTGTTTGTGGATTTCCCTGTACATTGGACGCATGCTTGTTGGGGTCGTTAGAGGATGGACTCAATGCTCTTCTATGTACAGAAATACGTGGATGTAAACTTCAAAATCGGACAAGTGCTCCACCCCCACCTCTCCAGGCAGGAACATTCTCGCGTGGTGTGGTGACCATGCGTTGTGATATATCCACAAGTAGTTCTGCTCATATATCACTTTTAGTGTCCGGTAGTGCCGACGCTTGTTTTAATGATCAGCTTTTGGAGAATCATATTAAAAAAGAACTCACCGAGAATAGTCAACTTGTTCAAGCAATTCCTAGTCATGAACAAAACAAATTGCCTTCATACGAACCTCGAAGATCAGCCTCAGTAGCCTGTGGATCTAGTGTGTTTGAAGTTTGTATGCGAGTTCCTACATGGGCTTCACAGGTTCTGAGACAACTTGCACCGAATGTGTCATACCGCTGCCTAGTTATGTTGGGAGTTGCTAGTATTCAAGGATTGGCCGTTGCATCTTTTACTAAAGATGATGCAGAACGTCTTCTTTTCTTTTGTTCTGTGAAGGAGAAAGATAACTTATCCAAAGATATCGTTTTCTCTGGTCACCCTAGTTGGTTGATACCTCCAGCACCTAGTCGAAAAAGATCCGAACCATGCTCTAGAATAAAATCTATTAATACTAGTGGCGTTCGAGATATTGGCAATGATAGACAGAAATTAAGTTTTGGTGCCATGAGGCCAATCCCTCAGTCTCATCGTCAGAAGCTTCTCCCTTTTTCTGGATTTTCCGAGGTAGAAAGATATGACAGAGACCATGGAAAATCAAATCAACTACTTCCTCCAATTAAGCACAATGGTTTAGGTCCTCATTCTGTTACAAATAGGAAATCTCTGTCAAATGCGTTTCAAGCTCACCAAATAATTTCTTTGAATCCACTACCTATGAAAAAGCATGGTTGTGATAGAGCTCCGATACGAGTTTGCTCGGAGGAGGAATTCCTGAAGGATGTAATGCAATTTCTGGTTCTTCGAGGACATACTCGCCTCATTCCACAAGGCGGATTTGCTGAGTTCCCTGACGCCGTTCTGAATGCTAAACGTCTCGACCTTTTCAACTTGTATAGAGAGGTGGTTTCAAGAGGAGGCTTTCACGTTGGAAATGGTATCAATTGGAAAGGACAAGTTTTCTCAAAGATGAGCAATCACACTCTGACACATAGAATGACGGGTGTTGGCAATACACTCAAAAGGCATTACGAAACCTATCTTTTAGAATATGAATTAGCTCATGATGATGTAGATGGAGAATGCTGCTTATTGTGTCACAGTAGTGCAGCAGGTGACTGGGTGAACTGCGGTTTATGTGGTGAGTGGGCTCATTTTGGTTGTGATAGGCGGCAGGGACTCGGAGCATTCAAGGACTATGCAAAAACTGACGGGCTCGAATACGTTTGTCCGCACTGCAGCATATCAAATTTCAGCAAAAAATCGCAGAAAACTACAAATGGCTACTAA 2265 0.4234 MLQFQGVSRHCSLLAVLSGKSHDSKQKQKQKQKQDDVSEGQFSSYPFPELSSSGHLEVKVLIKPTYDELGRVLEQLQPDFVYLQGQQLDDRGEIGSLVWEDFDLSTPEALCGLFSSKLPNTVYLETPKGEKLAEALHSEGVPYTIYWKNDFSKYAASHFHQAFFSVAQSTSSHTWDAFQLAQASFRLYCAQNNVVSHNSGKGGGKLGPQILGEPPNIEVGPCEANTKEEEEDSPETSSSIKIYDDDVITRFLVCGFPCTLDACLLGSLEDGLNALLCTEIRGCKLQNRTSAPPPPLQAGTFSRGVVTMRCDISTSSSAHISLLVSGSADACFNDQLLENHIKKELTENSQLVQAIPSHEQNKLPSYEPRRSASVACGSSVFEVCMRVPTWASQVLRQLAPNVSYRCLVMLGVASIQGLAVASFTKDDAERLLFFCSVKEKDNLSKDIVFSGHPSWLIPPAPSRKRSEPCSRIKSINTSGVRDIGNDRQKLSFGAMRPIPQSHRQKLLPFSGFSEVERYDRDHGKSNQLLPPIKHNGLGPHSVTNRKSLSNAFQAHQIISLNPLPMKKHGCDRAPIRVCSEEEFLKDVMQFLVLRGHTRLIPQGGFAEFPDAVLNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMSNHTLTHRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGLCGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSISNFSKKSQKTTNGY 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02566 754 Gene3D - 575 680 IPR036431 GO:0003677
Trre4g02566 754 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 681 744 IPR013083 -
Trre4g02566 754 MobiDBLite consensus disorder prediction 223 238 - -
Trre4g02566 754 SMART bright_3 578 682 IPR001606 GO:0003677
Trre4g02566 754 MobiDBLite consensus disorder prediction 22 36 - -
Trre4g02566 754 Pfam ARID/BRIGHT DNA binding domain 580 677 IPR001606 GO:0003677
Trre4g02566 754 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 754 IPR042293 -
Trre4g02566 754 CDD PHD_ARID4_like 687 738 - -
Trre4g02566 754 MobiDBLite consensus disorder prediction 19 40 - -
Trre4g02566 754 SUPERFAMILY FYVE/PHD zinc finger 680 743 IPR011011 -
Trre4g02566 754 CDD ARID 579 677 - -
Trre4g02566 754 MobiDBLite consensus disorder prediction 218 238 - -
Trre4g02566 754 ProSiteProfiles ARID domain profile. 577 681 IPR001606 GO:0003677
Trre4g02566 754 SUPERFAMILY ARID-like 578 692 IPR036431 GO:0003677
Trre4g02566 754 SMART ARID_2 574 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02566 Trre-Chr4 26560131 26565919 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02566 1 753 ARID Transcription Factor Family AT3G43240 64.021 0.0 955
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Trre4g02566 ARID 8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02566 - - tpra:123911371 1464.9