Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02565 ATGATGTTGCAATTTCAGGGTGTTTCAAGACATTGTAGTCTCCTTGCTGTTCTTAGTGGTAAATCACATGACAGTAAACAAAAACAGAAGCAGAAGCAGAAGCAAGATGATGTTTCTGAGGGTCAATTTTCATCATACCCCTTTCCCGAGCTTTCTTCGTCCGGGCATCTCGAGGTTAAAGTATTGATTAAACCTACTTACGATGAACTTGGTCGAGTTCTAGAACAACTGCAGCCGGATTTTGTTTACCTGCAAGGTCAGCAGCTAGATGATAGGGGAGAAATTGGGTCTCTTGTATGGGAAGATTTTGACTTGTCTACCCCAGAAGCCTTGTGTGGATTATTTTCTTCCAAATTACCTAATACTGTTTATTTGGAAACTCCCAAGGGTGAAAAATTGGCCGAGGCACTCCATTCCGAGGGAGTACCTTACACTATATACTGGAAAAATGATTTTTCAAAGTATGCAGCTTCACATTTTCATCAAGCATTTTTCTCAGTGGCACAAAGTACATCCAGCCATACATGGGATGCTTTCCAACTTGCTCAAGCATCTTTTAGACTATACTGTGCGCAAAACAATGTCGTATCGCATAACAGCGGGAAGGGCGGCGGTAAGCTTGGGCCGCAAATTCTTGGGGAACCTCCTAACATAGAAGTTGGTCCATGTGAAGCAAACACGAAGGAAGAAGAAGAAGATTCACCTGAGACTAGTTCTTCTATAAAGATATATGATGATGATGTGATTACGAGATTTCTTGTTTGTGGATTTCCCTGTACATTGGACGCATGCTTGTTGGGGTCGTTAGAGGATGGACTCAATGCTCTTCTATGTACAGAAATACGTGGATGTAAACTTCAAAATCGGACAAGTGCTCCACCCCCACCTCTCCAGGCAGGAACATTCTCGCGTGGTGTGGTGACCATGCGTTGTGATATATCCACAAGTAGTTCTGCTCATATATCACTTTTAGTGTCCGGTAGTGCCGACGCTTGTTTTAATGATCAGGTATCGCTTTTGGAGAATCATATTAAAAAAGAACTCACCGAGAATAGTCAACTTGTTCAAGCAATTCCTAGTCATGAACAAAACAAATTGCCTTCATACGAACCTCGAAGATCAGCCTCAGTAGCCTGTGGATCTAGTGTGTTTGAAGTTTGTATGCGAGTTCCTACATGGGCTTCACAGGTTCTGAGACAACTTGCACCGAATGTGTCATACCGCTGCCTAGTTATGTTGGGAGTTGCTAGTATTCAAGGATTGGCCGTTGCATCTTTTACTAAAGATGATGCAGAACGTCTTCTTTTCTTTTGTTCTGTGAAGGAGAAAGATAACTTATCCAAAGATATCGTTTTCTCTGGTCACCCTAGTTGGTTGATACCTCCAGCACCTAGTCGAAAAAGATCCGAACCATGCTCTAGAATAAAATCTATTAATACTAGTGGCGTTCGAGATATTGGCAATGATAGACAGAAATTAAGTTTTGGTGCCATGAGGCCAATCCCTCAGTCTCATCGTCAGAAGCTTCTCCCTTTTTCTGGATTTTCCGAGGTAGAAAGATATGACAGAGACCATGGAAAATCAAATCAACTACTTCCTCCAATTAAGCACAATGGTTTAGGTCCTCATTCTGTTACAAATAGGAAATCTCTGTCAAATGCGTTTCAAGCTCACCAAATAATTTCTTTGAATCCACTACCTATGAAAAAGCATGGTTGTGATAGAGCTCCGATACGAGTTTGCTCGGAGGAGGAATTCCTGAAGGATGTAATGCAATTTCTGGTTCTTCGAGGACATACTCGCCTCATTCCACAAGGCGGATTTGCTGAGTTCCCTGACGCCGTTCTGAATGCTAAACGTCTCGACCTTTTCAACTTGTATAGAGAGGTGGTTTCAAGAGGAGGCTTTCACGTTGGAAATGGTATCAATTGGAAAGGACAAGTTTTCTCAAAGATGAGCAATCACACTCTGACACATAGAATGACGGGTGTTGGCAATACACTCAAAAGGCATTACGAAACCTATCTTTTAGAATATGAATTAGCTCATGATGATGTAGATGGAGAATGCTGCTTATTGTGTCACAGTAGTGCAGCAGGTGACTGGGTGAACTGCGGTTTATGTGGTGAGTGGGCTCATTTTGGTTGTGATAGGCGGCAGGGACTCGGAGCATTCAAGGACTATGCAAAAACTGACGGGCTCGAATACGTTTGTCCGCACTGCAGCATATCAAATTTCAGCAAAAAATCGCAGAAAACTACAAATGGCTACTAA 2274 0.4235 MMLQFQGVSRHCSLLAVLSGKSHDSKQKQKQKQKQDDVSEGQFSSYPFPELSSSGHLEVKVLIKPTYDELGRVLEQLQPDFVYLQGQQLDDRGEIGSLVWEDFDLSTPEALCGLFSSKLPNTVYLETPKGEKLAEALHSEGVPYTIYWKNDFSKYAASHFHQAFFSVAQSTSSHTWDAFQLAQASFRLYCAQNNVVSHNSGKGGGKLGPQILGEPPNIEVGPCEANTKEEEEDSPETSSSIKIYDDDVITRFLVCGFPCTLDACLLGSLEDGLNALLCTEIRGCKLQNRTSAPPPPLQAGTFSRGVVTMRCDISTSSSAHISLLVSGSADACFNDQVSLLENHIKKELTENSQLVQAIPSHEQNKLPSYEPRRSASVACGSSVFEVCMRVPTWASQVLRQLAPNVSYRCLVMLGVASIQGLAVASFTKDDAERLLFFCSVKEKDNLSKDIVFSGHPSWLIPPAPSRKRSEPCSRIKSINTSGVRDIGNDRQKLSFGAMRPIPQSHRQKLLPFSGFSEVERYDRDHGKSNQLLPPIKHNGLGPHSVTNRKSLSNAFQAHQIISLNPLPMKKHGCDRAPIRVCSEEEFLKDVMQFLVLRGHTRLIPQGGFAEFPDAVLNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMSNHTLTHRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGLCGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSISNFSKKSQKTTNGY 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02565 757 MobiDBLite consensus disorder prediction 224 239 - -
Trre4g02565 757 Pfam ARID/BRIGHT DNA binding domain 583 680 IPR001606 GO:0003677
Trre4g02565 757 Gene3D - 578 683 IPR036431 GO:0003677
Trre4g02565 757 SUPERFAMILY FYVE/PHD zinc finger 683 746 IPR011011 -
Trre4g02565 757 ProSiteProfiles ARID domain profile. 580 684 IPR001606 GO:0003677
Trre4g02565 757 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 684 747 IPR013083 -
Trre4g02565 757 MobiDBLite consensus disorder prediction 219 239 - -
Trre4g02565 757 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 757 IPR042293 -
Trre4g02565 757 SMART bright_3 581 685 IPR001606 GO:0003677
Trre4g02565 757 SMART ARID_2 577 680 - -
Trre4g02565 757 MobiDBLite consensus disorder prediction 23 37 - -
Trre4g02565 757 SUPERFAMILY ARID-like 581 695 IPR036431 GO:0003677
Trre4g02565 757 CDD PHD_ARID4_like 690 741 - -
Trre4g02565 757 MobiDBLite consensus disorder prediction 20 41 - -
Trre4g02565 757 CDD ARID 582 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02565 Trre-Chr4 26560131 26565922 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02565 2 756 ARID Transcription Factor Family AT3G43240 63.852 0.0 951
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Trre4g02565 ARID 8.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02565 - - tpra:123911371 1459.89