Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02564 ATGATGTTGCAATTTCAGGGTGTTTCAAGACATTGTAGTCTCCTTGCTGTTCTTAGTGGTAAATCACATGACAGTAAACAAAAACAGAAGCAGAAGCAGAAGCAAGATGATGTTTCTGAGGGTCAATTTTCATCATACCCCTTTCCCGAGCTTTCTTCGTCCGGGCATCTCGAGGTTAAAGTATTGATTAAACCTACTTACGATGAACTTGGTCGAGTTCTAGAACAACTGCAGCCGGATTTTGTTTACCTGCAAGGTCAGCAGCTAGATGATAGGGGAGAAATTGGGTCTCTTGTATGGGAAGATTTTGACTTGTCTACCCCAGAAGCCTTGTGTGGATTATTTTCTTCCAAATTACCTAATACTGTTTATTTGGAAACTCCCAAGGGTGAAAAATTGGCCGAGGCACTCCATTCCGAGGGAGTACCTTACACTATATACTGGAAAAATGATTTTTCAAAGTATGCAGCTTCACATTTTCATCAAGCATTTTTCTCAGTGGCACAAAGTACATCCAGCCATACATGGGATGCTTTCCAACTTGCTCAAGCATCTTTTAGACTATACTGTGCGCAAAACAATGTCGTATCGCATAACAGCGGGAAGGGCGGCGGTAAGCTTGGGCCGCAAATTCTTGGGGAACCTCCTAACATAGAAGTTGGTCCATGTGAAGCAAACACGAAGGAAGAAGAAGAAGATTCACCTGAGACTAGTTCTTCTATAAAGATATATGATGATGATGTGATTACGAGATTTCTTGTTTGTGGATTTCCCTGTACATTGGACGCATGCTTGTTGGGGTCGTTAGAGGATGGACTCAATGCTCTTCTATGTACAGAAATACGTGGATGTAAACTTCAAAATCGGACAAGTGCTCCACCCCCACCTCTCCAGGCAGGAACATTCTCGCGTGGTGTGGTGACCATGCGTTGTGATATATCCACAAGTAGTTCTGCTCATATATCACTTTTAGTGTCCGGTAGTGCCGACGCTTGTTTTAATGATCAGCTTTTGGAGAATCATATTAAAAAAGAACTCACCGAGAATAGTCAACTTGTTCAAGCAATTCCTAGTCATGAACAAAACAAATTGCCTTCATACGAACCTCGAAGATCAGCCTCAGTAGCCTGTGGATCTAGTGTGTTTGAAGTTTGTATGCGAGTTCCTACATGGGCTTCACAGGTTCTGAGACAACTTGCACCGAATGTGTCATACCGCTGCCTAGTTATGTTGGGAGTTGCTAGTATTCAAGGATTGGCCGTTGCATCTTTTACTAAAGATGATGCAGAACGTCTTCTTTTCTTTTGTTCTGTGAAGGAGAAAGATAACTTATCCAAAGATATCGTTTTCTCTGGTCACCCTAGTTGGTTGATACCTCCAGCACCTAGTCGAAAAAGATCCGAACCATGCTCTAGAATAAAATCTATTAATACTAGTGGCGTTCGAGATATTGGCAATGATAGACAGAAATTAAGTTTTGGTGCCATGAGGCCAATCCCTCAGTCTCATCGTCAGAAGCTTCTCCCTTTTTCTGGATTTTCCGAGGTAGAAAGATATGACAGAGACCATGGAAAATCAAATCAACTACTTCCTCCAATTAAGCACAATGGTTTAGGTCCTCATTCTGTTACAAATAGGAAATCTCTGTCAAATGCGTTTCAAGCTCACCAAATAATTTCTTTGAATCCACTACCTATGAAAAAGCATGGTTGTGATAGAGCTCCGATACGAGTTTGCTCGGAGGAGGAATTCCTGAAGGATGTAATGCAATTTCTGGTTCTTCGAGGACATACTCGCCTCATTCCACAAGGCGGATTTGCTGAGTTCCCTGACGCCGTTCTGAATGCTAAACGTCTCGACCTTTTCAACTTGTATAGAGAGGTGGTTTCAAGAGGAGGCTTTCACGTTGGAAATGGTATCAATTGGAAAGGACAAGTTTTCTCAAAGATGAGCAATCACACTCTGACACATAGAATGACGGGTGTTGGCAATACACTCAAAAGGCATTACGAAACCTATCTTTTAGAATATGAATTAGCTCATGATGATGTAGATGGAGAATGCTGCTTATTGTGTCACAGTAGTGCAGCAGGTGACTGGGTGAACTGCGGTTTATGTGGTGAGTGGGCTCATTTTGGTTGTGATAGGCGGCAGGGACTCGGAGCATTCAAGGACTATGCAAAAACTGACGGGCTCGAATACGTTTGTCCGCACTGCAGCATATCAAATTTCAGCAAAAAATCGCAGAAAACTACAAATGGCTACTAA 2268 0.4233 MMLQFQGVSRHCSLLAVLSGKSHDSKQKQKQKQKQDDVSEGQFSSYPFPELSSSGHLEVKVLIKPTYDELGRVLEQLQPDFVYLQGQQLDDRGEIGSLVWEDFDLSTPEALCGLFSSKLPNTVYLETPKGEKLAEALHSEGVPYTIYWKNDFSKYAASHFHQAFFSVAQSTSSHTWDAFQLAQASFRLYCAQNNVVSHNSGKGGGKLGPQILGEPPNIEVGPCEANTKEEEEDSPETSSSIKIYDDDVITRFLVCGFPCTLDACLLGSLEDGLNALLCTEIRGCKLQNRTSAPPPPLQAGTFSRGVVTMRCDISTSSSAHISLLVSGSADACFNDQLLENHIKKELTENSQLVQAIPSHEQNKLPSYEPRRSASVACGSSVFEVCMRVPTWASQVLRQLAPNVSYRCLVMLGVASIQGLAVASFTKDDAERLLFFCSVKEKDNLSKDIVFSGHPSWLIPPAPSRKRSEPCSRIKSINTSGVRDIGNDRQKLSFGAMRPIPQSHRQKLLPFSGFSEVERYDRDHGKSNQLLPPIKHNGLGPHSVTNRKSLSNAFQAHQIISLNPLPMKKHGCDRAPIRVCSEEEFLKDVMQFLVLRGHTRLIPQGGFAEFPDAVLNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMSNHTLTHRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGLCGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSISNFSKKSQKTTNGY 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02564 755 MobiDBLite consensus disorder prediction 224 239 - -
Trre4g02564 755 SUPERFAMILY FYVE/PHD zinc finger 681 744 IPR011011 -
Trre4g02564 755 Pfam ARID/BRIGHT DNA binding domain 581 678 IPR001606 GO:0003677
Trre4g02564 755 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 682 745 IPR013083 -
Trre4g02564 755 CDD PHD_ARID4_like 688 739 - -
Trre4g02564 755 CDD ARID 580 678 - -
Trre4g02564 755 MobiDBLite consensus disorder prediction 219 239 - -
Trre4g02564 755 SMART ARID_2 575 678 - -
Trre4g02564 755 SMART bright_3 579 683 IPR001606 GO:0003677
Trre4g02564 755 MobiDBLite consensus disorder prediction 23 37 - -
Trre4g02564 755 Gene3D - 576 681 IPR036431 GO:0003677
Trre4g02564 755 ProSiteProfiles ARID domain profile. 578 682 IPR001606 GO:0003677
Trre4g02564 755 SUPERFAMILY ARID-like 579 693 IPR036431 GO:0003677
Trre4g02564 755 MobiDBLite consensus disorder prediction 20 41 - -
Trre4g02564 755 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 755 IPR042293 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02564 Trre-Chr4 26560131 26565922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02564 2 754 ARID Transcription Factor Family AT3G43240 64.021 0.0 956
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Trre4g02564 ARID 8.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02564 - - tpra:123911371 1464.9