Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02562 ATGAGTGTCAAAACGACAACAAAAACAACAACAATAGGCGTCGTTTCGCCATCCACGGCAGAGATAATCGACGTCGAAACTTTTCATTTCTCTCCGACCACCACCAAAACCTCGATCACCGCCGTAATCGATCTTTCTGACGCAGAAGACGATGACGATGTAAGAATCCTCAATTTCGTTCCCCAAAAAACCACCTTCGGAAAACGGAGAAGAATCAAAACTGAAAAAGGTGAGTCTTCGAAATCAAACAACGACGTTCCGTTTATTTGTGAAATTTGTACGGAGACGAAAACCACGAACGATGCTTTCTTCATCATTGGTTGTTCGCATGCTTATTGCTCTGATTGTGTTACTATGTACGTTCGTTCTAAGCTTGATGATAATGTGATCAATGTGAGGTGTCCTGTTTCTGGTTGTAGTGGTTTGTTAGAAGCCGAGGATTGTCGTTCGATTCTTCCGGCTGATGTTTTTGATCGGTGGGGGAAGGCGTTGTGTGAGGCTATGTTTGATGTTTCGGAGAAATTTTACTGTCCGTTTGCTGATTGTTCTGCTCTTTTGATTAATGATGGAACTGAGGAGGTTAGAGCTTCGGAGTGTCCGAATTGTAGGAGGTATTTTTGTGCAAAATGTAGGGTTCCGTGGCATGATGGGATCGAATGTAGCGATTTTGAGAAACTGAATGCGGACGAGAGAGGGAAAGAAGATATTATGTTGATGAAACTTGCTAAGGATATGAAGTGGAGACGATGCCCTAATTGTAGATTTTATGTTGCAAAATCGATGGGTTGCTTGTTCATGAAATGCAGGTGTGGAATTGCCTTCTGTTACAACTGTGGAGCTCTTAACACAACTAACAACCATTATTGCAGCATATGTAAACACTAA 885 0.4203 MSVKTTTKTTTIGVVSPSTAEIIDVETFHFSPTTTKTSITAVIDLSDAEDDDDVRILNFVPQKTTFGKRRRIKTEKGESSKSNNDVPFICEICTETKTTNDAFFIIGCSHAYCSDCVTMYVRSKLDDNVINVRCPVSGCSGLLEAEDCRSILPADVFDRWGKALCEAMFDVSEKFYCPFADCSALLINDGTEEVRASECPNCRRYFCAKCRVPWHDGIECSDFEKLNADERGKEDIMLMKLAKDMKWRRCPNCRFYVAKSMGCLFMKCRCGIAFCYNCGALNTTNNHYCSICKH 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02562 294 SUPERFAMILY RING/U-box 231 290 - -
Trre4g02562 294 CDD Rcat_RBR_unk 246 280 - -
Trre4g02562 294 ProSiteProfiles Zinc finger RING-type profile. 90 136 IPR001841 -
Trre4g02562 294 ProSitePatterns Zinc finger RING-type signature. 108 117 IPR017907 -
Trre4g02562 294 FunFam RBR-type E3 ubiquitin transferase 222 294 - -
Trre4g02562 294 SMART ring_2 250 292 IPR001841 -
Trre4g02562 294 SMART ring_2 90 137 IPR001841 -
Trre4g02562 294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 172 IPR013083 -
Trre4g02562 294 CDD BRcat_RBR_unk 171 223 - -
Trre4g02562 294 ProSiteProfiles TRIAD supradomain profile. 86 294 IPR044066 -
Trre4g02562 294 Gene3D - 175 220 - -
Trre4g02562 294 SUPERFAMILY RING/U-box 87 169 - -
Trre4g02562 294 Gene3D - 221 294 - -
Trre4g02562 294 SUPERFAMILY RING/U-box 165 225 - -
Trre4g02562 294 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 65 292 IPR031127 GO:0004842|GO:0016567
Trre4g02562 294 SMART ibrneu5 230 292 IPR002867 GO:0008270
Trre4g02562 294 SMART ibrneu5 158 220 IPR002867 GO:0008270
Trre4g02562 294 Pfam IBR domain, a half RING-finger domain 173 220 IPR002867 GO:0008270
Trre4g02562 294 FunFam RBR-type E3 ubiquitin transferase 85 171 - -
Trre4g02562 294 Pfam Zinc finger, C3HC4 type (RING finger) 90 135 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02562 Trre-Chr4 26548594 26551091 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02562 90 280 C3H Transcription Factor Family AT2G19610 32.673 5.03e-23 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02562 K11975 - gmx:100807821 377.481