Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02561 ATGAAACAAGAGAAAAGAACAAGAACATGGAACAGAGTTCCACGCATCGACTCCTCCGGCTATTTTCGCAAGCGAAAAATCTCCGACGAGTTTGATTTTTCCGAAAAAGACGAGGGCTACATGAAGATCTTCAAACAGCCCCTTATGGGAAATCCTAAAAGAAAGAACTTTCAAACTGGAGAGTCTTCAAATTCGAAATACAAGCAATTTTATTGCAAAATCTGCACGGATATTAAAACTATGAGGGAAGCTTTTTACATCAGCGGTTGCTCTCACGCTTATTGCTCCGATTGCGTGGCGAAGCACATCCATTACAAACTTGACCATAACATTATTAACATTAAATGTCCTTTTCCCGGGTGCAGAGGTTCGTTAGAACCAGAGTTTTGCCGTTCGATTCTTCCAACCGAGGATTTTAAACGATGGAATAAGGCCGTCTGCGAGGTTTTGTTCAATATTACGGAGAAATTCTATTGTCCCTTTGCAGACTGTTCTGCTCTTTTGATCAATGACGGAATGGAGGCTGTTAGGAATTTAGAATGTCCTAATTGTAATAGGATGTTCTGTGGACAATGTAAGGCTCGATGCCATGAAGGAATCCAATGCAACGAGTTCAAGAAATTGAAGCGGGACGATAAGGGGAAGGAAGTTATGGTGACGAACATTGCGAAAGATATGCATTGGAGGCAATGTCCAAAGTGCAGATTTTATGTTGCCAAATCTGAGAGCAGCAACATCATGAGATGCAGGTGTGAATGTAGATTTTGTTACAATTGTGGAGATGTCTTCTCCACTGGCAGGTGTAACTGTTATAAGAGGAATTCCATTTATTCGGATAAACGACTGAAACATATTCGCCCAAGAGTTTCTAAGAAAAAGTATACTATCCAAACTATAGCTGATAAAACAGGTCGTCTGGCTCATTTCGGCCTGGCTGGGGCGGATTTTGGGATGCATCGGGACAGGCTGAAAAGCCCAGATGAAAAAACAGGCTGCAATGGGCTTGCGATTCTTTCAAGGAAAGCTCAAATCCAATATTGGTAG 1044 0.4176 MKQEKRTRTWNRVPRIDSSGYFRKRKISDEFDFSEKDEGYMKIFKQPLMGNPKRKNFQTGESSNSKYKQFYCKICTDIKTMREAFYISGCSHAYCSDCVAKHIHYKLDHNIINIKCPFPGCRGSLEPEFCRSILPTEDFKRWNKAVCEVLFNITEKFYCPFADCSALLINDGMEAVRNLECPNCNRMFCGQCKARCHEGIQCNEFKKLKRDDKGKEVMVTNIAKDMHWRQCPKCRFYVAKSESSNIMRCRCECRFCYNCGDVFSTGRCNCYKRNSIYSDKRLKHIRPRVSKKKYTIQTIADKTGRLAHFGLAGADFGMHRDRLKSPDEKTGCNGLAILSRKAQIQYW 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02561 347 Gene3D - 200 309 - -
Trre4g02561 347 SUPERFAMILY RING/U-box 216 271 - -
Trre4g02561 347 FunFam RBR-type E3 ubiquitin transferase 67 153 - -
Trre4g02561 347 ProSiteProfiles TRIAD supradomain profile. 68 283 IPR044066 -
Trre4g02561 347 SUPERFAMILY RING/U-box 68 149 - -
Trre4g02561 347 ProSiteProfiles Zinc finger RING-type profile. 72 117 IPR001841 -
Trre4g02561 347 SUPERFAMILY RING/U-box 143 207 - -
Trre4g02561 347 CDD Rcat_RBR_unk 227 261 - -
Trre4g02561 347 ProSitePatterns Zinc finger RING-type signature. 90 99 IPR017907 -
Trre4g02561 347 SMART ibrneu5 140 202 IPR002867 GO:0008270
Trre4g02561 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 150 IPR013083 -
Trre4g02561 347 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 55 281 IPR031127 GO:0004842|GO:0016567
Trre4g02561 347 Pfam IBR domain, a half RING-finger domain 155 202 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02561 Trre-Chr4 26545305 26547735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02561 72 260 C3H Transcription Factor Family AT2G19610 25.871 6.39e-17 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02561 K11975 - mnt:21402499 261.922