Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02557 ATGGATCCTAATGCTTGCAACATGCATTCACATTGTATACACATGGAAATTCATCAAGTTGTTCCACCACCCCACAAAAGCACTTTACACAAACTCAAAATTAGGCTCAAGGAAACTTTTTTCCCTGATGATCCTCTACGCCAATTCAAAGGAAAATCACTTAAAACAAAAATGATTTTAGGAGCTAAATATTTTTTCCCTATTCTTCAATGGGGTTCTAATTATAGCTTCAAACTCTTTAAATCTGACCTTATTTCTGGTCTCACTATTGCTAGCTTAGCAATCCCACAGGGAATTAGTTATGCCAAGCTTGCAAATCTTCCTCCAATTGTAGGATTATATTCTAGTTTTGTTCCTCCACTTATTTATGCTGTTCTTGGAACTTCACTAGGAATTCTAAGATTAGGATTTATCATTGATTTTTTATCAAAGGCAATCTTAATTGGATTCATGGCTGGTACTGCTATAATTGTGTCTTTGCAACAACTTAAGAGCTTACTTGGAATTACACATTTTACTAAAGAAATGGGTCTTGTTCCTGTTATGAGTTCTGTTTTTCACAATATACATGAGTGGTCATGGCAAACAATAGTTATGGGAATTTGCTTCTTGATGCTACTACTAATAGCAAGACAAGTTAGTATAAGGAAACCAAAGCTATTCTGGGTCTCTGCTGGAGCACCTCTTATGTGTGTCATCATCTCTACTCTTTTTTGCTTTGCAATCAAGGCTCAAAATCATGGCATCAGTTTAATTGGAAAATTACATGAAGGAATAAATCCTCCTTCATGGAATATGTTGAAATTTCATGGAAGTCACCTTGGTCTAGTCATGAAAACTGGCCTTATCACTGCCATTTTGTCCCTCACTGAAGGTATTGCAGTAGGAAGAACATTTGCAGCTCTGGGAAACTACAAAGTGGATGGAAATAAGGAAATGATGGCAATTGGATTTATGAATGTTGTTGGCTCCTCCACTTCCTGCTATGTTACAACAGGTGCTTTCTCTCGTTCAGCTGTTAATAATAACGCAGGAGCGAAAACAGCAGCTTCAAATATAGTAATGTCTGTGACAGTGATGGTGACACTTCTTTTTCTTATGCCATTGTTCCAATACACACCTAATGTTGTATTGGGTGCAATCATAGTCACAGCAGTGATTGGCCTCATCGATATCCCTGCTGCTTGCCACATTTGGAAGATAGACAAATTTGACTTCCTTGTCATGTTAACTGCTTTCTTGGGTGTTATTTTTATCTCAGTCCAAGAAGGTCTTGCTGTTGCAGTTGGATTATCAACTTTTAGGATACTCCTGCAAATTACAAGGCCTAAAACAGTAATGATGGGGAACATACCAGGGACAGACATATATAGAAATCTTCATCAATACAAGGAAGCTACAAGAATACCAGGATTTCTTATTTTAAGCATTGAAGCTCCAATCAATTTTGCAAACATCACATATCTCAATGACAGGACATTACGATGGATTGAAGAGGAAGAAGAAGATAACATAAAGGAACACTCAAGTCTTCGATTTTTAATCCTGGATATGTTAGCTGTGAGCGCCATTGACACGAGTGGAATCTCACTTTTCAAGGAGTTAAAGGCAACACTGGAAAAGAAGGGTGTTGAACTTGTGTTGGTTAATTCTCTCGCCGAGGTCATTGAAAAGCTGAAAAAAGCAGACGAATCTAATACTTTCATACGAGCAGACAACCTTTTCTTGACAGTTGGAGAGGCTGTGGCGTCACTTTCATCAACAATGAAGAGCCAATCAACCACGACAGAAGAAACACATACAATCGTTCCACATTACTGA 1821 0.3784 MDPNACNMHSHCIHMEIHQVVPPPHKSTLHKLKIRLKETFFPDDPLRQFKGKSLKTKMILGAKYFFPILQWGSNYSFKLFKSDLISGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLIYAVLGTSLGILRLGFIIDFLSKAILIGFMAGTAIIVSLQQLKSLLGITHFTKEMGLVPVMSSVFHNIHEWSWQTIVMGICFLMLLLIARQVSIRKPKLFWVSAGAPLMCVIISTLFCFAIKAQNHGISLIGKLHEGINPPSWNMLKFHGSHLGLVMKTGLITAILSLTEGIAVGRTFAALGNYKVDGNKEMMAIGFMNVVGSSTSCYVTTGAFSRSAVNNNAGAKTAASNIVMSVTVMVTLLFLMPLFQYTPNVVLGAIIVTAVIGLIDIPAACHIWKIDKFDFLVMLTAFLGVIFISVQEGLAVAVGLSTFRILLQITRPKTVMMGNIPGTDIYRNLHQYKEATRIPGFLILSIEAPINFANITYLNDRTLRWIEEEEEDNIKEHSSLRFLILDMLAVSAIDTSGISLFKELKATLEKKGVELVLVNSLAEVIEKLKKADESNTFIRADNLFLTVGEAVASLSSTMKSQSTTTEETHTIVPHY 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02557 606 Pfam STAS domain 463 581 IPR002645 -
Trre4g02557 606 ProSiteProfiles STAS domain profile. 462 585 IPR002645 -
Trre4g02557 606 FunFam Sulfate transporter 31 442 588 - -
Trre4g02557 606 Pfam Sulfate permease family 80 129 IPR011547 GO:0016020
Trre4g02557 606 Pfam Sulfate permease family 130 411 IPR011547 GO:0016020
Trre4g02557 606 CDD STAS_SulP_like_sulfate_transporter 463 563 - -
Trre4g02557 606 Gene3D STAS domain 442 588 IPR036513 -
Trre4g02557 606 PANTHER SULFATE TRANSPORTER 130 588 IPR001902 GO:0016020|GO:0055085
Trre4g02557 606 NCBIfam sulfate permease 129 581 IPR001902 GO:0016020|GO:0055085
Trre4g02557 606 SUPERFAMILY SpoIIaa-like 467 585 IPR036513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02557 Trre-Chr4 26464897 26470831 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02557 15 592 Inorganic Solute Cotransporters AT3G15990 60.601 0.0 744
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02557 K17471 - gmx:100787284 955.666