Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02556 ATGGATCCTAATGCTTGCAACATGCATTCACATTGTATACACATGGAAATTCATCAAGTTGTTCCACCACCCCACAAAAGCACTTTACACAAACTCAAAATTAGGCTCAAGGAAACTTTTTTCCCTGATGATCCTCTACGCCAATTCAAAGGAAAATCACTTAAAACAAAAATGATTTTAGGAGCTAAATATTTTTTCCCTATTCTTCAATGGGGTTCTAATTATAGCTTCAAACTCTTTAAATCTGACCTTATTTCTGGTCTCACTATTGCTAGCTTAGCAATCCCACAGGGAATTAGTTATGCCAAGCTTGCAAATCTTCCTCCAATTGTAGGATTATATTCTAGTTTTGTTCCTCCACTTATTTATGCTGTTCTTGGAAGTTCAAGGGATCTAGCAACAAGAAGTATCTCCTTCAGCAGAACCTGTTCTGCTCTTACTTCAACTTTCTTTGCTGGTCTATTTCAAGCTTCACTAGGAATTCTAAGATTAGGATTTATCATTGATTTTTTATCAAAGGCAATCTTAATTGGATTCATGGCTGGTACTGCTATAATTGTGTCTTTGCAACAACTTAAGAGCTTACTTGGAATTACACATTTTACTAAAGAAATGGGTCTTGTTCCTGTTATGAGTTCTGTTTTTCACAATATACATGAGTGGTCATGGCAAACAATAGTTATGGGAATTTGCTTCTTGATGCTACTACTAATAGCAAGACAAGTTAGTATAAGGAAACCAAAGCTATTCTGGGTCTCTGCTGGAGCACCTCTTATGTGTGTCATCATCTCTACTCTTTTTTGCTTTGCAATCAAGGCTCAAAATCATGGCATCAGTTTAATTGGAAAATTACATGAAGGAATAAATCCTCCTTCATGGAATATGTTGAAATTTCATGGAAGTCACCTTGGTCTAGTCATGAAAACTGGCCTTATCACTGCCATTTTGTCCCTCACTGAAGGTATTGCAGTAGGAAGAACATTTGCAGCTCTGGGAAACTACAAAGTGGATGGAAATAAGGAAATGATGGCAATTGGATTTATGAATGTTGTTGGCTCCTCCACTTCCTGCTATGTTACAACAGGTGCTTTCTCTCGTTCAGCTGTTAATAATAACGCAGGAGCGAAAACAGCAGCTTCAAATATAGTAATGTCTGTGACAGTGATGGTGACACTTCTTTTTCTTATGCCATTGTTCCAATACACACCTAATGTTGTATTGGGTGCAATCATAGTCACAGCAGTGATTGGCCTCATCGATATCCCTGCTGCTTGCCACATTTGGAAGATAGACAAATTTGACTTCCTTGTCATGTTAACTGCTTTCTTGGGTGTTATTTTTATCTCAGTCCAAGAAGGTCTTGCTGTTGCAGTTGGATTATCAACTTTTAGGATACTCCTGCAAATTACAAGGCCTAAAACAGTAATGATGGGGAACATACCAGGGACAGACATATATAGAAATCTTCATCAATACAAGGAAGCTACAAGAATACCAGGATTTCTTATTTTAAGCATTGAAGCTCCAATCAATTTTGCAAACATCACATATCTCAATGACAGGACATTACGATGGATTGAAGAGGAAGAAGAAGATAACATAAAGGAACACTCAAGTCTTCGATTTTTAATCCTGGATATGTTAGCTGTGAGCGCCATTGACACGAGTGGAATCTCACTTTTCAAGGAGTTAAAGGCAACACTGGAAAAGAAGGGTGTTGAACTTGTGTTGGTTAATTCTCTCGCCGAGGTCATTGAAAAGCTGAAAAAAGCAGACGAATCTAATACTTTCATACGAGCAGACAACCTTTTCTTGACAGTTGGAGAGGCTGTGGCGTCACTTTCATCAACAATGAAGAGCCAATCAACCACGACAGAAGAAACACATACAATCGTTCCACATTACTGA 1908 0.38 MDPNACNMHSHCIHMEIHQVVPPPHKSTLHKLKIRLKETFFPDDPLRQFKGKSLKTKMILGAKYFFPILQWGSNYSFKLFKSDLISGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLIYAVLGSSRDLATRSISFSRTCSALTSTFFAGLFQASLGILRLGFIIDFLSKAILIGFMAGTAIIVSLQQLKSLLGITHFTKEMGLVPVMSSVFHNIHEWSWQTIVMGICFLMLLLIARQVSIRKPKLFWVSAGAPLMCVIISTLFCFAIKAQNHGISLIGKLHEGINPPSWNMLKFHGSHLGLVMKTGLITAILSLTEGIAVGRTFAALGNYKVDGNKEMMAIGFMNVVGSSTSCYVTTGAFSRSAVNNNAGAKTAASNIVMSVTVMVTLLFLMPLFQYTPNVVLGAIIVTAVIGLIDIPAACHIWKIDKFDFLVMLTAFLGVIFISVQEGLAVAVGLSTFRILLQITRPKTVMMGNIPGTDIYRNLHQYKEATRIPGFLILSIEAPINFANITYLNDRTLRWIEEEEEDNIKEHSSLRFLILDMLAVSAIDTSGISLFKELKATLEKKGVELVLVNSLAEVIEKLKKADESNTFIRADNLFLTVGEAVASLSSTMKSQSTTTEETHTIVPHY 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02556 635 SUPERFAMILY SpoIIaa-like 496 614 IPR036513 -
Trre4g02556 635 NCBIfam sulfate permease 67 610 IPR001902 GO:0016020|GO:0055085
Trre4g02556 635 ProSiteProfiles STAS domain profile. 491 614 IPR002645 -
Trre4g02556 635 Pfam STAS domain 492 610 IPR002645 -
Trre4g02556 635 FunFam Sulfate transporter 31 471 617 - -
Trre4g02556 635 PANTHER SULFATE TRANSPORTER 29 617 IPR001902 GO:0016020|GO:0055085
Trre4g02556 635 ProSitePatterns SLC26A transporters signature. 109 130 IPR018045 GO:0008271|GO:0008272
Trre4g02556 635 Pfam Sulfate permease family 80 440 IPR011547 GO:0016020
Trre4g02556 635 CDD STAS_SulP_like_sulfate_transporter 492 592 - -
Trre4g02556 635 Gene3D STAS domain 471 617 IPR036513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02556 Trre-Chr4 26464897 26470831 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02556 15 621 Inorganic Solute Cotransporters AT3G15990 63.608 0.0 785
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02556 K17471 - gmx:100787284 1059.28