Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02551 ATGGATCGAAAGAGAAGAAGAAGTAACAGAGTTCCATATTCCAAAGGCATGAAGAAGTTCCTCAATTTCATTCCCAAACAAATCCCTATGAAAAAACGTAAAAGAAACGACTATTTTGATAAGGTAGGGTCTTCAAAGTCAAAAAATATGGAGTTTGATTGCAAAATCTGCACGAAAACTAAAACGACGGGGGATGCTTTCTACCTCAGCGGTTGCTCTCACTCTTATTGTTCCGATTGTGTTGTGTCGTACATCCGATACAAGCTTGAACATAAAATTATTAACATTATGTGTCCGGTTCCTGGGTGCCGTGGTTGGTTAGAACCGGAGTTTTGCCGTTCAAATCTTCCTCGCGAGGTTTTTGAACGGTGGGACAAGGCGTTGTGCAAGGATTTGTTCAATGTTACGGAGAAATTCTACTGTCCCTTTGCAGATTGTTCCGCTCTTTTGATCAATGACGGAAAGGAGGCTGTTGGTAAGTTAGAATGTCCAAATTGTAATAGGATGATTTGTGCACAATGTAAGGTTCGTTGGCACGAAGGAATCAAATGCAAGGAGTTCATGAAACTGAACCGAGGCGATAAGGGGAAAGATGTTATGCTGACGAAATTTGCAAAAAATATGAGGTGGAGGCAATGTCCGAAGTGCAGATTTTATGTTGCCAAATCTAAGAGCGGCAACATCATGAATTGCAGGTGCCATTGTACATTTTGTTACAAATGTGGAGGCGTTTGCTCTAATGGCAAGTGGAAGTTGTGCAACTGTTATAAGAGGAAATTGGTTTACCCAACTCAACCAACTTTCTCAAATAAGGACTGCATCATTTGGGCTCAACAACTTAAAGATATTCTCGAGAGTGAATTTTTCACTGATTGA 876 0.4053 MDRKRRRSNRVPYSKGMKKFLNFIPKQIPMKKRKRNDYFDKVGSSKSKNMEFDCKICTKTKTTGDAFYLSGCSHSYCSDCVVSYIRYKLEHKIINIMCPVPGCRGWLEPEFCRSNLPREVFERWDKALCKDLFNVTEKFYCPFADCSALLINDGKEAVGKLECPNCNRMICAQCKVRWHEGIKCKEFMKLNRGDKGKDVMLTKFAKNMRWRQCPKCRFYVAKSKSGNIMNCRCHCTFCYKCGGVCSNGKWKLCNCYKRKLVYPTQPTFSNKDCIIWAQQLKDILESEFFTD 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02551 291 Pfam IBR domain, a half RING-finger domain 123 184 IPR002867 GO:0008270
Trre4g02551 291 Gene3D - 182 272 - -
Trre4g02551 291 SUPERFAMILY RING/U-box 198 257 - -
Trre4g02551 291 ProSiteProfiles TRIAD supradomain profile. 50 259 IPR044066 -
Trre4g02551 291 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 41 258 IPR031127 GO:0004842|GO:0016567
Trre4g02551 291 Pfam Zinc finger, C3HC4 type (RING finger) 54 99 IPR018957 GO:0046872
Trre4g02551 291 CDD BRcat_RBR_unk 135 187 - -
Trre4g02551 291 FunFam RBR-type E3 ubiquitin transferase 49 135 - -
Trre4g02551 291 SUPERFAMILY RING/U-box 127 189 - -
Trre4g02551 291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 136 IPR013083 -
Trre4g02551 291 ProSiteProfiles Zinc finger RING-type profile. 54 100 IPR001841 -
Trre4g02551 291 ProSitePatterns Zinc finger RING-type signature. 72 81 IPR017907 -
Trre4g02551 291 SUPERFAMILY RING/U-box 51 133 - -
Trre4g02551 291 SMART ibrneu5 122 184 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02551 Trre-Chr4 26348367 26350652 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02551 54 243 C3H Transcription Factor Family AT2G19610 26.500 6.91e-17 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02551 K11975 - twl:119981634 266.929