Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02550 ATGGGTATAGAGAAAAGAACCAGTTTCCCACACCTCGACTCGTTCCACTTATCCGGCAAGCGAAATATCTCCGACGTTGTTGATCTTTCGGATGAAGACTTTTCCGATGAGGACAACGACATTAAGATCTTCAATTTCATTCCGAAAATTACCTATTTCGGAACACGTAAAAGAAACAACAACTCTGGAAAAGGAGAGTATTCATATTCGAAAGGCAGGCCGTTTCTTTGCGACCTCTGCCTAGATAAGAAAACAAGCAGGGACGCTTTCTACATCAGCGGTTGCCATCACTTTTATTGCTCCGATTGCGTGGCGAAGCACATCCTTTCCGAACTTGATGATAACAATATTAACATTAGGTGTCCTGCTTTCGGGTGTAGAGGTACTTTAGAAGCAGAATTTTGCCGTTCGATTCTTCCAACCGAGGATTTTAAACGATGGAATAAGGTGGTATGCGAGGTTTTGTTCAATATTAAGGAGAAATTCTATTGTCCCTTTCCAGACTGTTCTGCTCTTTTGATCAATAACAGAACGAAGGATGTTAAGAATTTTGAATGTCCTAATTGTAATAGGATGCTCTGTGGACTGTGTAAAGTTCGATCGCATGAAGGAATCGAATGCAGCGAGTTCAAGAAATTGATGCGGGACGATAAGGGAAAAGATGTTGTGCTGGCGAACATTGCGGATGATACGAGGTGGAGACAGTGTCCCAAGTGCAGTATTTATGTTGCCAAATCTGGTGGCTGCAGTATCATGGAATGCAGGTCTTGTTGTAGATTTTGTTACACATGTGGAAGTGTCTACCCTACTGGCATGTGCAACTGTTATAAGAGAAATTCCATTTATCTGGGTCAAATTCGCTCGAAAGGTTTCATGGGTAGAGTTTTCACTAATAGAATTTTCCCAAAGAGGAACCATATCCATTTGGATTGA 933 0.4159 MGIEKRTSFPHLDSFHLSGKRNISDVVDLSDEDFSDEDNDIKIFNFIPKITYFGTRKRNNNSGKGEYSYSKGRPFLCDLCLDKKTSRDAFYISGCHHFYCSDCVAKHILSELDDNNINIRCPAFGCRGTLEAEFCRSILPTEDFKRWNKVVCEVLFNIKEKFYCPFPDCSALLINNRTKDVKNFECPNCNRMLCGLCKVRSHEGIECSEFKKLMRDDKGKDVVLANIADDTRWRQCPKCSIYVAKSGGCSIMECRSCCRFCYTCGSVYPTGMCNCYKRNSIYLGQIRSKGFMGRVFTNRIFPKRNHIHLD 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02550 310 SUPERFAMILY RING/U-box 73 154 - -
Trre4g02550 310 ProSiteProfiles Zinc finger RING-type profile. 77 122 IPR001841 -
Trre4g02550 310 FunFam RBR-type E3 ubiquitin transferase 72 158 - -
Trre4g02550 310 SUPERFAMILY RING/U-box 148 212 - -
Trre4g02550 310 Pfam IBR domain, a half RING-finger domain 159 207 IPR002867 GO:0008270
Trre4g02550 310 SMART ibrneu5 145 207 IPR002867 GO:0008270
Trre4g02550 310 SUPERFAMILY RING/U-box 222 275 - -
Trre4g02550 310 ProSiteProfiles TRIAD supradomain profile. 73 289 IPR044066 -
Trre4g02550 310 Gene3D - 204 288 - -
Trre4g02550 310 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 51 268 IPR031127 GO:0004842|GO:0016567
Trre4g02550 310 ProSitePatterns Zinc finger RING-type signature. 95 104 IPR017907 -
Trre4g02550 310 CDD Rcat_RBR_unk 232 268 - -
Trre4g02550 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 157 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02550 Trre-Chr4 26241220 26243915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02550 77 266 C3H Transcription Factor Family AT2G19610 31.000 3.13e-20 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02550 K11975 - gmx:100803898 260.766