Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02546 ATGGGTTTTGAGACATTCCACCTTCCAAGTAGAAAAAGAAGAAACAGTGTTCCACATTCCACACCAGTGGTAATCGACCTCGATTCCTACCGCTTCTCCGGCAAGCGACCCATCTCCGACATCATTGATCTTTCCGATGAAGACGACAACGACGACGAAGTAAAGATCCTTAATTTCATTCCCAAGACTACCCCTTTGGTAAAAAGTAAAAGAAACAACAACACTGAAAAAGGAGAGTCTTCAAATTCCAAAAACACACCATTTGTTTGTGAAATCTGCACGGACACTAAAACAATCAGTGATGCTTTCTACATCAGCGGTTGCTCTCACGCTTATTGCTCCGATTGTGTGGCGATGTACATTGGTTCCAAACTTGATGATAACATCGCCAACATTGGGTGTCCAGTTCCCGGGTGCAGTGGATTATTAGAAGCGGAGTTTTGCCGTTCGATTCTTACTCCTGAAGTTTTCGAACGGTGGAGTAAGGCGTTGTGCGAGGCTTTGTTCAATGTTACGGAGAAATTCTATTGTCCTTTTGCAGACTGTTCTGCTCTTTTGATCAATGACGGAATGAAGGCTGTTAGGAATTCTGAATTGATGTTTGTAATCCAAGTTCTCAGGGTTCCATGGCATGACGGAATCGAATGCAGCGAGTTTGAGAAGCTGAATGCAGACGAGAGAGGGAGAGAAGATGTTATGTTGATGAACCTCGCGAAGGATATGCAATGGGCTGCAACACCATGTCCTGCAGATGAAGGGAGTAACAAGCAAGAGTCATTTGAGGTAGATGGAGAACCTAATTTTGATTCCGGTCCATCGGAAGACGGATGGGAATATCTTAGGCGTGTCAGAGTAATTCGGCAGCTACTTGTTGTTGATCTTATCACTACCAAACCACTCTTGATTAATGGATTAATGGTTCAAGGAGCATTGGATGCTTAA 942 0.4374 MGFETFHLPSRKRRNSVPHSTPVVIDLDSYRFSGKRPISDIIDLSDEDDNDDEVKILNFIPKTTPLVKSKRNNNTEKGESSNSKNTPFVCEICTDTKTISDAFYISGCSHAYCSDCVAMYIGSKLDDNIANIGCPVPGCSGLLEAEFCRSILTPEVFERWSKALCEALFNVTEKFYCPFADCSALLINDGMKAVRNSELMFVIQVLRVPWHDGIECSEFEKLNADERGREDVMLMNLAKDMQWAATPCPADEGSNKQESFEVDGEPNFDSGPSEDGWEYLRRVRVIRQLLVVDLITTKPLLINGLMVQGALDA 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02546 313 ProSitePatterns Zinc finger RING-type signature. 108 117 IPR017907 -
Trre4g02546 313 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 54 249 IPR031127 GO:0004842|GO:0016567
Trre4g02546 313 Pfam Zinc finger, C3HC4 type (RING finger) 90 135 IPR018957 GO:0046872
Trre4g02546 313 ProSiteProfiles Zinc finger RING-type profile. 90 136 IPR001841 -
Trre4g02546 313 MobiDBLite consensus disorder prediction 248 273 - -
Trre4g02546 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 169 IPR013083 -
Trre4g02546 313 FunFam RBR-type E3 ubiquitin transferase 85 171 - -
Trre4g02546 313 SUPERFAMILY RING/U-box 85 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02546 Trre-Chr4 26221190 26229212 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02546 90 221 C3H Transcription Factor Family AT2G19610 30.405 1.55e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g02546 K11975 - gmx:100803898 241.506