Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g02545 ATGGATTTGGAGACATTCCACCTTCCAAGTAGAAGTAATAGAGTTCCACAATCCACTCCGGAGATAATCAACCTCGACACCTATCGCTTATCCGGCAAGCGAGTCATCTCCGAGCAAGTCGCCAGTGTCTCCGAGGTCATTGACCTTTCTGATGAAGAAGACGACGATGACATTAAGATCCTCAATTTCATTCCCAAAAGTACTTCATTCGGAAAACGCAAAAGAATCGATAAAGGAGAGTCTTCAAATTCAAGAAACGCGCCATTTGTTTGCGAAATCTGCACGGACACTAAAACAATGAGGGACGCTTTTTACATCAGTGGTTGCTCTCACGTTTATTGCTCCGATTGCGTGGCAATGTACATCTGTTCTAAACTTGATGATAACATCACAAATATTGGGTGTCCAGTTCCCGGGTGCAGTGGTTTATTAGAACCGGAGTATTGCTATTCAATTCTTAAGCCCGAGGTTTTTGAACGATGGGGTAAGGCGTTGTGCGAGGCTTTGATTGATGTATCGGAGAAGTTTTATTGTCCTTTTGCTGACTGCTCCGCTCTTTTGATCAATGATGGAACGGAGGCTGTTGGGAATACTAAATGTCCTCATTGTAATAGGATGTTTTGTGCACAATGCAAGGTTCCATGGCATAACGGAATCGAATGCAGCGAGTTCGAGAAACTACACACGGACGAGAGGGGGAGAGAAGATGTTATGTTGGTTAACCTTGCGAAGAAAAAGAATTGGCAGCGATGCCCCAAATGCAGAATTTATGTTGCCAGAAATAGGGGCTGCAATACCATCTCCTGCAGGTGCGGTTGTCGTTTTTGTTACAAATGTGGTTATTTATCCGGTATGTGTGTCTGTTATGAGCTGAAGACAAGAGGAATTCCCTCCACGGTTTCCATTGGTGGAAATTTCCCTCTCCACCCTACAAATATAGCTCAGATATATCAACAAAATTTCACCGGTGGAATTTTCACGAGTGAAAATTTTCCTAATAGGAATCCTCCCAATTCGTATAAACCACAACAACAAAATTTCTTTGGAATTTCCGGAGGAGTTTCCACAAGTGGAAATTTTCCTAACAGGAACCATCCCTATTCGTATAAACCACAACAACCAAATTACTCTAGAATTTCCGGAGGAGTTTCCACCGATGGAGTTTTCACCGGTGGAAATTTTCCTAATTGGAACCCTCCCTGCTCGTATAAACCACAACAACAATTTTCCTCAGAAATTTCTGGAGGAGTTTCCACTAGTGGAACTTTCCCTTATGGTTACCCCATCAATTCGGCTCAACCACGACAACAAATTCCCAACGGAGTTGCCTATACGGTTCAACAACAAGAACAAATTCCCTCCATAGGTTCAACAACAGGAACTTTGCCTCATGTGTTTGGATAG 1404 0.4295 MDLETFHLPSRSNRVPQSTPEIINLDTYRLSGKRVISEQVASVSEVIDLSDEEDDDDIKILNFIPKSTSFGKRKRIDKGESSNSRNAPFVCEICTDTKTMRDAFYISGCSHVYCSDCVAMYICSKLDDNITNIGCPVPGCSGLLEPEYCYSILKPEVFERWGKALCEALIDVSEKFYCPFADCSALLINDGTEAVGNTKCPHCNRMFCAQCKVPWHNGIECSEFEKLHTDERGREDVMLVNLAKKKNWQRCPKCRIYVARNRGCNTISCRCGCRFCYKCGYLSGMCVCYELKTRGIPSTVSIGGNFPLHPTNIAQIYQQNFTGGIFTSENFPNRNPPNSYKPQQQNFFGISGGVSTSGNFPNRNHPYSYKPQQPNYSRISGGVSTDGVFTGGNFPNWNPPCSYKPQQQFSSEISGGVSTSGTFPYGYPINSAQPRQQIPNGVAYTVQQQEQIPSIGSTTGTLPHVFG 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g02545 467 SUPERFAMILY RING/U-box 87 171 - -
Trre4g02545 467 ProSiteProfiles TRIAD supradomain profile. 87 323 IPR044066 -
Trre4g02545 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 174 IPR013083 -
Trre4g02545 467 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 57 294 IPR031127 GO:0004842|GO:0016567
Trre4g02545 467 Pfam IBR domain, a half RING-finger domain 165 221 IPR002867 GO:0008270
Trre4g02545 467 ProSitePatterns Zinc finger RING-type signature. 109 118 IPR017907 -
Trre4g02545 467 Gene3D - 218 293 - -
Trre4g02545 467 SMART ibrneu5 159 221 IPR002867 GO:0008270
Trre4g02545 467 FunFam RBR-type E3 ubiquitin transferase 86 172 - -
Trre4g02545 467 CDD BRcat_RBR_unk 172 224 - -
Trre4g02545 467 ProSiteProfiles Zinc finger RING-type profile. 91 137 IPR001841 -
Trre4g02545 467 CDD Rcat_RBR_unk 247 280 - -
Trre4g02545 467 SUPERFAMILY RING/U-box 232 285 - -
Trre4g02545 467 SUPERFAMILY RING/U-box 165 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g02545 Trre-Chr4 26205275 26210190 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g02545 91 280 C3H Transcription Factor Family AT2G19610 29.000 1.22e-19 89.0